lineage | Count |
---|---|
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;La1 | 1 |
lineage4.2;La1.7 | 1 |
148 | |
lineage4.1 | 2 |
lineage4.3.4 | 2 |
lineage4.3.4.2.1 | 4 |
lineage3;lineage2.1 | 1 |
lineage2.1 | 1 |
lineage4 | 49 |
lineage4.8 | 4 |
lineage4.9 | 39 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1 | 23 |
lineage3 | 5 |
lineage1.1.1 | 1 |
lineage4.1.2.1 | 15 |
lineage1.1.2 | 1 |
lineage4.6.2.2 | 3 |
lineage3.1 | 2 |
lineage1.1 | 1 |
lineage2.2 | 7 |
lineage2.2.1.1 | 3 |
lineage4.3.3 | 2 |
La2 | 1 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
La1 | 2 |
La1.8.1 | 3 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.7 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.2 | 1 |
lineage6.1.3 | 1 |
lineage2.2.1.2 | 2 |
lineage1.2.1.2 | 1 |
lineage4.2.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage1.1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 349 |
ID | Drug resistance | Lineage | Country iso2 | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675488 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675270 | HR-TB | None | SRR3675222 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675501 | HR-TB | None | ERR1750908 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR181887 | HR-TB | None | SRR3675510 | Other | None | ERR176651 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR4816976 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR212123 | Other | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | SRR3675570 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2446566 | Other | lineage4.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR1035162 | Other | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818929 | HR-TB | None | SRR5341387 | Other | lineage4 | None | SRR5341453 | Sensitive | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341456 | Other | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341425 | Other | lineage4 | None | SRR5341418 | Other | None | ERR1035138 | MDR-TB | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046514 | HR-TB | None | ERR4830353 | Other | None | SRR6046492 | Other | None | SRR6325448 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6511621 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR323036 | HR-TB | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR502889 | Other | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR8217918 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323043 | HR-TB | None | ERR323041 | HR-TB | None | ERR323039 | HR-TB | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1035122 | Sensitive | None | ERR1063862 | HR-TB | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283021 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283025 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3439432 | Other | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR4024991 | Other | None | ERR4188350 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4797264 | Sensitive | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4797474 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798099 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358991 | HR-TB | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6866639 | Other | None | ERR6866022 | Other | None | ERR736865 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736839 | Other | None | ERR736872 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736875 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8976043 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786507 | Sensitive | lineage4.7 | None | ERR9786604 | Other | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787030 | Sensitive | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1172310 | HR-TB | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR990545 | Other | lineage3 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1173568 | Other | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173384 | Other | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173629 | Other | None | SRR1175074 | MDR-TB | None | SRR1173778 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184372 | MDR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13837514 | Sensitive | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19304036 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR19324818 | Sensitive | lineage1.1.1.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR26399490 | Sensitive | lineage4.9 | None |
---|