EBG00000313325 - n.468delGinsCA
Drug resistance types
20 Sensitive
5 RR-TB
43 HR-TB
6 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 5 |
| lineage4.9 | 42 |
| lineage4.8 | 3 |
| lineage4 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage3 | 4 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| La1.8.1 | 4 |
| La1.7;lineage4.9;lineage7 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage1.1.3.3 | 1 |
| lineage2.2.1 | 11 |
| lineage4.3.4.2 | 1 |
| La1.3 | 3 |
| lineage1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.3.3 | 3 |
| La1;lineage4.9 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage1.1.1.1 | 1 |
| La1.2.BCG | 1 |
| La3;lineage4 | 1 |
| lineage4.3.4 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage6.1.3 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 111 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR6045832 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR13180204 | Other | lineage3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR6046141 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR26159063 | RR-TB | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9787362 | Sensitive | lineage6 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | SRR6855695 | Sensitive | lineage4.8 | None | SRR7236177 | Other | La1.8.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR3797029 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4769514 | Other | La1.3 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR13423649 | Other | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR16156817 | Other | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4769436 | Other | La1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4769552 | Sensitive | La1.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None |
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