Rv3596c - c.1800A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
49 Sensitive
4 RR-TB
37 HR-TB
13 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
51 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 79 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.1;lineage4.9 | 3 |
| La2;lineage2.2 | 1 |
| lineage4.8 | 4 |
| lineage2.2.1 | 13 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.1.1.2 | 1 |
| 5 | |
| La1.8.1 | 4 |
| lineage3 | 4 |
| lineage4.1.2 | 2 |
| lineage6.1.3 | 2 |
| lineage2;lineage4 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage6 | 2 |
| lineage4.3.3 | 1 |
| La1.3 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 158 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1196583 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1173355 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR11662694 | Other | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR11462861 | Other | La1.8.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR3675246 | Other | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR1710057 | Other | lineage2.1 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR9787030 | Sensitive | lineage6 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4798823 | HR-TB | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3416776 | Other | lineage2.1 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR1023302 | MDR-TB | lineage3 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR29055611 | Sensitive | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None |
|---|
