Rv0668 - c.396T>G
Drug resistance types
28 Sensitive
23 RR-TB
92 HR-TB
39 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
77 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.5 | 2 |
| lineage2.2.1 | 15 |
| lineage4.9 | 126 |
| lineage4.9;lineage7 | 4 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.4.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.4 | 1 |
| lineage1.1.2 | 3 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.6.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.3.2.1 | 1 |
| lineage3 | 5 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La1.7;lineage4.9 | 5 |
| lineage4.1.2.1 | 3 |
| lineage4.6.2.2 | 4 |
| lineage2.2.1.1 | 1 |
| M.canetti;lineage4.9 | 4 |
| lineage4.9;lineage9 | 3 |
| lineage2;lineage4 | 1 |
| lineage4.4.1.1.1 | 2 |
| La3;lineage4 | 1 |
| 4 | |
| lineage4.8 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 3 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| La1.8.1 | 2 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.8.1 | 2 |
| lineage4 | 3 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage2.2 | 4 |
| La2;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.2.BCG | 1 |
| lineage1.1.3.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage6.1.1 | 2 |
| lineage4.9.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2;lineage4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1.2;lineage7 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 264 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR3801503 | Other | lineage4.6.2.2 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4817069 | RR-TB | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR7535082 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR926164 | Other | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1158918 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR9786711 | Other | lineage4.6.2.2 | None | SRR6044835 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341425 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR6046594 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR1063896 | HR-TB | None | SRR7535086 | Other | None | ERR987722 | MDR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | ERR9786597 | Other | lineage4.6.2.2 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3797029 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046046 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | SRR1181256 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045555 | Other | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR926160 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR1180996 | Other | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR6045053 | Other | lineage4 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR926165 | Other | lineage4.9 | None |
|---|
