Rv0006 - c.231T>C
Drug resistance types
68 Sensitive
3 RR-TB
143 HR-TB
21 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
118 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4;lineage1.1.2 | 1 |
| lineage2.2.1 | 18 |
| La1.8.1 | 3 |
| 131 | |
| lineage1.2.2.2 | 39 |
| lineage3.1.3 | 1 |
| lineage4.1 | 3 |
| lineage3 | 8 |
| lineage4 | 15 |
| lineage4.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.8 | 3 |
| lineage4.9 | 51 |
| lineage4.7 | 2 |
| lineage4;lineage1.1 | 1 |
| lineage4.1.2.1 | 19 |
| lineage4.1.1.3;lineage1.2.2.2 | 2 |
| lineage5.2 | 2 |
| lineage4.4.1.1 | 3 |
| lineage1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.2.1.1 | 1 |
| La2 | 1 |
| lineage4.4.2 | 1 |
| La1 | 1 |
| lineage4.6.1.1 | 4 |
| lineage4.1.3 | 2 |
| La1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 2 |
| lineage1.2.1.2 | 1 |
| lineage2.1 | 3 |
| lineage4.5 | 1 |
| lineage1 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 356 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | SRR7496472 | Other | None | ERR3275272 | Sensitive | lineage1.2.2.2 | nl | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR1035162 | Other | None | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | ERR4817537 | Sensitive | lineage3 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR3275348 | Sensitive | lineage1.2.2.2 | nl | SRR5007188 | Other | lineage4 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818929 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341456 | Other | None | SRR5341400 | HR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341408 | Sensitive | lineage3 | None | ERR4820335 | Other | lineage4.1.2.1 | None | SRR5341418 | Other | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR2100270 | HR-TB | lineage4.1.1.3;lineage1.2.2.2 | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR2100301 | MDR-TB | lineage1.2.2.2 | None | SRR6046305 | Other | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | ERR2446412 | Sensitive | lineage1.2.2.2 | nl | SRR6046133 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | ERR4821884 | Sensitive | lineage1.2.2.2 | None | SRR6045555 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046385 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2517195 | Sensitive | lineage1.2.2.2 | nl | ERR2517185 | Sensitive | lineage1.2.2.2 | nl | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6325442 | HR-TB | None | ERR4799618 | Other | lineage1.2.2.2 | in | ERR4800314 | Sensitive | lineage1.2.2.2 | in | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046482 | HR-TB | None | SRR6442524 | Other | lineage1.2.2.2 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4798708 | Sensitive | lineage1.2.2.2 | in | SRR6650244 | Sensitive | lineage1.2.2.2 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4816700 | Sensitive | lineage1.2.2.2 | gb | SRR6981961 | Sensitive | lineage2.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6797620 | Other | lineage1.2.2.2 | None | ERR2503478 | Sensitive | lineage1.2.2.2 | fi | ERR502524 | HR-TB | La2 | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | DRR189011 | Sensitive | lineage1.2.2.2 | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR1034634 | HR-TB | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR1034652 | Other | None | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR114452 | MDR-TB | lineage1.2.2.2 | None | ERR117710 | HR-TB | lineage4.1.1.3;lineage1.2.2.2 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR4821801 | Sensitive | lineage1.2.2.2 | gb | ERR133986 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR5336148 | Other | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798406 | HR-TB | None | ERR2514247 | Other | lineage1.2.2.2 | gb | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798504 | Other | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358991 | HR-TB | None | ERR702404 | HR-TB | None | ERR6866410 | Sensitive | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | SRR22249590 | Other | lineage1.2.2.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR22251804 | HR-TB | lineage1.2.2.2 | None | ERR8976043 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9125590 | Sensitive | lineage1.2.2.2 | None | ERR9117709 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR13837990 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR13837514 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12416824 | HR-TB | None | SRR12882025 | Sensitive | lineage1.2.2.2 | None | SRR12882036 | Sensitive | lineage1.2.2.2 | None | SRR12882039 | Sensitive | lineage1.2.2.2 | None | SRR12882037 | Sensitive | lineage1.2.2.2 | None | SRR12882725 | Sensitive | lineage1.2.2.2 | None | SRR12882721 | Sensitive | lineage1.2.2.2 | None | SRR12882731 | Sensitive | lineage1.2.2.2 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR14514372 | Sensitive | lineage1.2.2.2 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861449 | Other | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861568 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861720 | Other | lineage4.9 | None | SRR15368973 | Other | None | SRR1791696 | Other | La1.8.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR16057988 | Sensitive | lineage1.2.2.2 | None | SRR1640750 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR19303884 | HR-TB | None | SRR18913787 | Sensitive | lineage1.2.2.2 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18149510 | Sensitive | lineage1.2.2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19324981 | Sensitive | lineage1.2.2.2 | None | SRR19304036 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR19576437 | Sensitive | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR25827434 | Sensitive | lineage1.2.2.2 | None | SRR21735256 | Other | lineage1 | None | SRR8692887 | Other | None | ERR4815604 | HR-TB | None | SRR6797476 | Other | lineage1.2.2.2 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR22251380 | Sensitive | lineage1.2.2.2 | None | SRR26112545 | Sensitive | lineage1.2.2.2 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675486 | HR-TB | None | SRR3675502 | Other | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675270 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675221 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4816999 | Other | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675510 | Other | None | ERR212121 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675555 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816656 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None |
|---|
