lineage | Count |
---|---|
87 | |
lineage4.1.1 | 2 |
lineage4.9 | 30 |
lineage2.2.1 | 5 |
lineage4.1.2.1 | 3 |
lineage4 | 68 |
lineage4.3 | 1 |
lineage2.2 | 3 |
La1.8.1 | 2 |
lineage4.1.1.2 | 1 |
lineage5.1.4 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 1 |
lineage4.2.1 | 1 |
lineage4.4.1.1 | 1 |
lineage5.2 | 2 |
lineage4.3.4.1 | 2 |
lineage4.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.6.1.1 | 2 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
lineage2 | 1 |
lineage3 | 1 |
lineage4.5 | 2 |
lineage1.1.2 | 2 |
lineage4.3.2 | 1 |
La3 | 1 |
lineage3.1 | 1 |
lineage4.3.3 | 1 |
La1.7.1 | 1 |
lineage4;lineage2.2 | 1 |
lineage4.9;La3 | 1 |
spoligotype | Count |
---|---|
None | 231 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675234 | Other | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4815489 | Sensitive | lineage4.9 | None | SRR3675311 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR7496472 | Other | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | SRR5007188 | Other | lineage4 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341302 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341315 | Sensitive | None | SRR5341333 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2693231 | Other | None | ERR2693230 | Other | None | ERR2693257 | Other | None | SRR6045503 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046397 | Other | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046594 | HR-TB | lineage4 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046604 | Sensitive | lineage2.2.1 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR6789626 | Other | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323108 | HR-TB | lineage4 | None | SRR7535086 | Other | None | ERR323107 | Other | lineage4 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1023525 | HR-TB | lineage4 | None | ERR3283051 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283024 | Other | None | ERR3283031 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283047 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349265 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797017 | Other | None | ERR3797048 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR387051 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR405209 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4811030 | Sensitive | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798431 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797313 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6358979 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736848 | HR-TB | None | ERR7910877 | MDR-TB | lineage4.1.1 | None | ERR736874 | HR-TB | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9634265 | Sensitive | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1169306 | Other | None | SRR1173400 | Other | None | SRR1172951 | Other | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR14782405 | HR-TB | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR8692905 | HR-TB | None | SRR19303884 | HR-TB | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR26159035 | Sensitive | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None |
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