Rv0006 - c.427_429delAGGinsCGT
Drug resistance types
40 Sensitive
0 RR-TB
17 HR-TB
2 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
66 Other
lineage Counts
| lineage | Count |
|---|---|
| 15 | |
| lineage4.9 | 34 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.1.1.2 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.9;lineage6.3 | 6 |
| lineage5.2 | 2 |
| lineage2.1;lineage4.9 | 10 |
| lineage4.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 4 |
| lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.5 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1.7;lineage4.9 | 4 |
| lineage4.1.3 | 2 |
| lineage4.7 | 1 |
| La1.7.1 | 1 |
| lineage4.1.1.3 | 1 |
| La1.8.1 | 1 |
| lineage2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.8 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.1 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage2.2.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 126 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4800341 | Other | None | SRR29050859 | Other | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7535086 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7496509 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR3675221 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR18213713 | HR-TB | None | ERR387051 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | SRR8692887 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | SRR3675236 | Other | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR9117721 | HR-TB | None | SRR26159035 | Sensitive | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR7240033 | Other | La1.8.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR7496472 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4815604 | Other | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR6789626 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4811311 | Other | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3675214 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR7496517 | Other | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1169249 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None |
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