Rv0006 - c.366C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
2 RR-TB
30 HR-TB
7 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 37 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 1 |
| La1.8.2 | 2 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2.1.1 | 2 |
| M.canetti;lineage4.2 | 1 |
| lineage4.3.4 | 1 |
| La1.8.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage1 | 1 |
| La3;lineage4.9 | 5 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.5 | 2 |
| lineage4.1.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| La1.2.BCG;La1.8.2 | 1 |
| lineage2.2.1 | 1 |
| lineage3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR176651 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR15368745 | Sensitive | lineage2.2.1;lineage4.5 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR7851378 | Other | La1.8.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR7851304 | Other | La1.8.2 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR11662694 | Other | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR25628561 | HR-TB | lineage4.5 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR22249543 | Sensitive | lineage1.1.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | SRR6045371 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR13986557 | HR-TB | La1.2.BCG;La1.8.2 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR25628560 | HR-TB | lineage4.5 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
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