Rv0006 - c.351C>T
Drug resistance types
42 Sensitive
10 RR-TB
60 HR-TB
31 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1;lineage4.8 | 2 |
| lineage4.9 | 63 |
| lineage4.1 | 1 |
| 9 | |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 23 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.2.1 | 11 |
| lineage1.2.2.2 | 3 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.8 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3 | 3 |
| lineage2.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.1;lineage4.9 | 6 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.3.2 | 1 |
| lineage4 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage2.2.1 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.1.1.3 | 1 |
| lineage4.2.2.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;lineage4.9 | 7 |
| lineage5.2 | 2 |
| La1;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.9;lineage7 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage4.6.2.2 | 5 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage2.2.1.1 | 3 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.8.1 | 3 |
| lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| La3;lineage4.8 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage3.1 | 1 |
| La1.2.BCG | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 240 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR13861266 | Sensitive | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR22250196 | Sensitive | lineage1.2.2.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR28351347 | Other | lineage3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR28044974 | Sensitive | lineage1.2.2.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR29096710 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR29096709 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096394 | Sensitive | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR29096530 | Sensitive | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR28119827 | Other | La3;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR373947 | Other | lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1238558 | Other | lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR6044815 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR1640750 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | SRR13861510 | Other | lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR29096882 | Sensitive | lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1791747 | Other | La1.8.1 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR22249614 | Sensitive | lineage1.2.2.2 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR29231298 | Sensitive | lineage4.9 | None | SRR15014682 | MDR-TB | lineage4.8 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR6789626 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR13265833 | Other | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR2229542 | Other | lineage4.8 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR212001 | HR-TB | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None |
|---|
