Rv0676c - c.2472A>G


Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
44 Sensitive 5 RR-TB 96 HR-TB 41 MDR-TB 6 Pre-XDR-TB 0 XDR-TB 99 Other
lineage Counts
lineage Count
lineage4.9 79
lineage2.1;lineage4.9 17
M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage4.2;lineage4.9 3
lineage2.1;lineage4.9;lineage6.3 7
La1.2.BCG;La1.8.1 1
22
M.canetti;lineage2.1;lineage4.9 20
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9 11
La3;lineage2.1;lineage4.9 2
La1.7;lineage4.9;lineage7 3
La2;lineage2.2 1
lineage2.2.1 12
La2;lineage4.9 2
M.canetti;lineage2.2 1
M.canetti;lineage4.9 3
lineage4.1.1.1 2
lineage4.8 3
lineage4 1
lineage4.7 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage1.2.1.2.1 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage2.1 2
lineage4.9;lineage6.3 8
lineage4.3.2.1 1
lineage1.1.3.1 1
lineage2.1;lineage6.3 2
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.9;lineage7 3
lineage4.1.2 2
M.canetti;lineage2.1;lineage6.3 2
La1.7;lineage4.9 5
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.3.4.2.1 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage4.8;lineage4.9 2
lineage4.4.1.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1.2 1
M.canetti;lineage4.9;lineage9 1
La3;M.canetti;lineage2.2.1 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage4.1.2.1 3
lineage4.4.1.2 1
La1.7;lineage3.1;lineage4 1
lineage3.1.2.2 1
lineage4.3.2 1
lineage4.9;lineage9 2
lineage4.1.2.1.1 1
lineage4.2;lineage4.8.1;lineage4.9 2
M.canetti;lineage1 1
lineage3.1.1 1
La1;lineage4.9 1
lineage4.3.4.2 1
lineage2.2 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage3.1.2.1 1
lineage3 2
La3;lineage4.9 3
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
La3;M.canetti;lineage4.8;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.9 1
La1.8.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage1.1.2 1
lineage2.1;lineage4.1.4;lineage4.9 1
La2;lineage4.9;lineage9 1
lineage4.1.1;lineage4.9 1
La1.7.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.3.2;lineage4.9 1
La1.7;M.canetti;lineage4.9 1
spoligotype Counts
spoligotype Count
None 291
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR323062 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR3283042 Other lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR1158918 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR1196768 MDR-TB None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4815604 Other None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1159378 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736848 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR736856 Sensitive lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR10809074 Sensitive lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR11049020 Other lineage4.8 None
SRR6046133 HR-TB lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR2027263 Other lineage4 None
SRR29096879 Sensitive lineage4.9 None
ERR4811105 HR-TB None
ERR4819051 Sensitive lineage4.9 None
SRR6789626 Other None
ERR4810624 HR-TB lineage2.2.1 None
ERR4769474 HR-TB lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR10315567 Other lineage2.2.1 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4819932 Sensitive lineage4.7 None
SRR6511621 Sensitive lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR1510066 Other lineage1.2.1.2.1 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4799378 Sensitive lineage4.9 None
SRR20970016 Other lineage2.2.1 None
SRR20969677 HR-TB lineage2.1 None
ERR4816466 HR-TB lineage4.9 None
ERR4816585 Other lineage2.2.1 None
ERR13265748 Other lineage4.9;lineage6.3 None
SRR5341453 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR6046382 Sensitive lineage2.2.1 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117709 Other None
SRR6325447 HR-TB lineage4.1.1.1 None
ERR3797047 MDR-TB lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR9970979 Sensitive lineage4.8 None
SRR28119811 Other lineage2.2.1 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR9970980 Other lineage4.1.2 None
ERR3797086 Sensitive lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR29096246 Sensitive La1.7;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR779852 Sensitive lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR4797264 Sensitive lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1180226 HR-TB lineage4.9 None
ERR6866022 Other lineage4.8;lineage4.9 None
SRR6045555 Other lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR6866807 Other lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1196583 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675507 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.2.1.2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR1063896 Sensitive None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR4188247 HR-TB lineage4.9 None
SRR6044780 Sensitive lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
ERR6866410 Sensitive lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14801759 HR-TB La1.7;lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR3283030 HR-TB lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6045219 HR-TB lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4810741 HR-TB None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR6358991 HR-TB None
ERR772255 MDR-TB lineage4.3.2 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR29096174 Sensitive La1.7;lineage4.9 None
ERR4811311 Other None
SRR28119753 Other lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR1196474 Other lineage3.1.1 None
SRR1196546 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR9634265 Sensitive lineage4.3.4.2 None
ERR8976043 HR-TB lineage2.2 None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR751326 Other lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR12416824 HR-TB None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR4817893 Other lineage4.8 None
SRR29096659 Sensitive lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1 None
SRR10315466 RR-TB lineage2.2.1 None
SRR17832802 HR-TB lineage3 None
ERR212138 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR971389 Sensitive lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1172234 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1183111 HR-TB lineage4.9 None
ERR323085 Sensitive lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11465511 Other lineage4.3.4.2.1 None
SRR1184294 Other lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
SRR5341387 Other lineage4.9 None
SRR25827682 Other None
SRR28119805 Other lineage4.9 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR6044815 Other lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2693252 Sensitive lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR137286 Other lineage4.9 None
ERR323066 Sensitive lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797029 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
SRR1173355 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4798099 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR29097058 Other lineage4.9 None
ERR4800341 Other None
ERR4816999 Other None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR4811142 RR-TB None
ERR4797193 HR-TB lineage1.1.2 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4811075 Other None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR1165699 Other lineage4.9 None
ERR702406 Other lineage2.1 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325442 HR-TB lineage4.1.1;lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR3675246 Other lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR9970978 Sensitive lineage4.1.2 None
ERR1034634 HR-TB lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
ERR736834 Sensitive lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4024991 Other lineage4.8;lineage4.9 None
SRR1184381 MDR-TB None
ERR234659 Other None
SRR28044873 Pre-XDR-TB lineage3 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1162864 Other lineage4.1.2.1 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4797474 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR1184372 MDR-TB None
SRR1640750 Other None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4796254 Sensitive lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None