Rv0006 - c.405C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
40 Sensitive
1 RR-TB
26 HR-TB
0 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.8 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 11 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4 | 2 |
| La1.8.1 | 3 |
| 1 | |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 109 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR926163 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6046046 | Other | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR13265833 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None |
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