Rv0676c - c.2565T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
51 Sensitive
3 RR-TB
29 HR-TB
4 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 67 |
| La1.7;lineage4.9 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage4.9;lineage6.3 | 5 |
| La3;lineage4 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1 | 13 |
| lineage2.1;lineage4.9 | 3 |
| La1.8.1 | 3 |
| 12 | |
| lineage1.1.2 | 2 |
| La3;lineage4.9 | 9 |
| lineage4.3.4.2 | 1 |
| lineage3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.3.4 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4 | 1 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage4.6.2.2 | 1 |
| lineage2.1 | 1 |
| lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 145 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119805 | Other | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | SRR29097058 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4811075 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1791747 | Other | La1.8.1 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675236 | Other | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117709 | Other | None | SRR3675246 | Other | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR25827682 | Other | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR1063896 | Sensitive | None | SRR1159378 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4811142 | RR-TB | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR2307676 | MDR-TB | lineage2.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None |
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