Rv0639 - c.171G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
31 Sensitive
4 RR-TB
43 HR-TB
12 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
45 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 11 |
| La1;lineage4.9 | 3 |
| lineage4.9 | 65 |
| lineage3 | 2 |
| lineage4.3.4.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4 | 3 |
| lineage2.2.1.2 | 2 |
| M.canetti;lineage4.9 | 4 |
| lineage4.1.2 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2 | 2 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1.7;lineage4.2 | 1 |
| 4 | |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La2;lineage4.9 | 2 |
| lineage3.1.2.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.8.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La2;lineage2.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 137 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR29096150 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4816656 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR29097026 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR1063896 | Sensitive | None | ERR502511 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2446566 | Other | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR1063846 | HR-TB | lineage4.9 | None |
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