Rv0006 - c.378G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
35 Sensitive
4 RR-TB
55 HR-TB
12 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
65 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 76 |
| La1.8.1 | 2 |
| lineage4 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.9;lineage6.3 | 6 |
| lineage2.2.1.1 | 1 |
| 10 | |
| lineage2.2.1 | 2 |
| lineage4.1.2.1 | 5 |
| lineage4.5 | 1 |
| lineage2.2.1.2 | 1 |
| La3;lineage4.9 | 8 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La2;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage9 | 3 |
| lineage4.4.1.2 | 1 |
| lineage3 | 2 |
| lineage1.1.2 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.2 | 3 |
| lineage4.3.4.2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage3.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| La3;lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.4 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage6 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 174 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR26159035 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR11252664 | Other | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR1791747 | Other | La1.8.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR400345 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR11662694 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4811075 | Other | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR2660539 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4811142 | RR-TB | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR10561898 | Sensitive | lineage4.3.3 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4407463 | HR-TB | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR8692887 | Other | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9787030 | Sensitive | lineage6 | None | ERR400326 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR13285191 | Sensitive | lineage4.9 | None |
|---|
