Rv2428 - c.-51G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
24 Sensitive
46 RR-TB
45 HR-TB
71 MDR-TB
115 Pre-XDR-TB
5 XDR-TB
11 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1.1 | 8 |
| lineage4.5 | 20 |
| lineage4.3.4.2.1 | 5 |
| lineage6.2.2 | 2 |
| lineage4.8 | 12 |
| lineage4.1.1.1 | 2 |
| lineage2.2.1 | 118 |
| lineage4.3.3 | 41 |
| lineage1.2.1.2.1 | 3 |
| lineage1.1.2 | 5 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2 | 4 |
| lineage4.1.2.1;lineage4.8 | 1 |
| lineage2.2.1.2 | 6 |
| lineage4.1.2.1 | 16 |
| lineage3 | 1 |
| lineage2.2.2 | 7 |
| lineage4.2.1 | 9 |
| lineage4.1.1.3 | 12 |
| lineage4.3.4.2 | 4 |
| lineage4.3.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.4.2 | 2 |
| lineage4.6.1.2 | 4 |
| lineage4.4.1.1.1 | 1 |
| lineage4.2.1;lineage4.3.3 | 2 |
| lineage2.2;lineage4.2.2.2 | 1 |
| lineage4.1.1 | 5 |
| lineage1.1.3.2 | 1 |
| lineage5.3 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.6.2.2 | 1 |
| La1.7.1 | 2 |
| lineage4.9.1 | 1 |
| lineage4.9 | 3 |
| lineage4.6 | 1 |
| lineage4.8.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.7;lineage4.8 | 2 |
| lineage2.2.1;lineage4.2.2 | 1 |
| lineage4.1 | 1 |
| lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 317 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818954 | HR-TB | lineage4.2.1.1 | None | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | ERR13288807 | MDR-TB | lineage4.3.4.2.1 | None | ERR10679989 | HR-TB | lineage6.2.2 | None | SRR13919626 | HR-TB | lineage4.8 | None | SRR13583436 | Sensitive | lineage4.1.1.1 | None | ERR4796257 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797662 | Pre-XDR-TB | lineage2.2.1 | in | ERR9993041 | XDR-TB | lineage4.3.4.2.1 | None | ERR5864814 | MDR-TB | lineage4.3.3 | None | SRR16088146 | Pre-XDR-TB | lineage4.3.3 | None | ERR3256143 | MDR-TB | lineage1.2.1.2.1 | ph | ERR3256144 | MDR-TB | lineage1.2.1.2.1 | ph | SRR1180135 | HR-TB | lineage1.1.2 | None | SRR1183011 | HR-TB | lineage1.1.2 | None | ERR13284700 | MDR-TB | lineage2.2.1 | None | SRR1166934 | MDR-TB | lineage4.3.3 | None | ERR4815278 | Other | lineage4.8 | None | SRR13312533 | Pre-XDR-TB | lineage4.3.3 | None | ERR13285120 | MDR-TB | lineage4.5 | None | SRR1723932 | Pre-XDR-TB | lineage4.5 | cn | SRR1723493 | RR-TB | lineage2.2.1 | cn | SRR16115033 | HR-TB | lineage2.2.1 | None | ERR2179675 | Pre-XDR-TB | lineage4.5 | cn | SRR6824430 | RR-TB | lineage2.2.1.1 | cn | SRR10147685 | Pre-XDR-TB | lineage4.5 | None | SRR10147703 | Pre-XDR-TB | lineage4.5 | None | ERR2600506 | Sensitive | lineage4.1.2 | None | SRR29230929 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420761 | MDR-TB | lineage2.2.1 | None | SRR7516424 | Pre-XDR-TB | lineage2.2.1 | None | SRR29124288 | Sensitive | lineage4.3.3 | None | ERR11049468 | Sensitive | lineage4.1.2.1;lineage4.8 | None | SRR10305971 | Pre-XDR-TB | lineage2.2.1 | None | SRR18054799 | RR-TB | lineage2.2.1 | None | ERR11069059 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR6785279 | MDR-TB | lineage4.3.3 | None | SAMN03246586 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13261891 | MDR-TB | lineage4.1.2.1 | None | ERR13291081 | Other | lineage2.2.1 | None | SRR28045008 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316284 | RR-TB | lineage2.2.1 | None | SRR12420637 | MDR-TB | lineage2.2.1 | None | ERR4814296 | Sensitive | lineage4.8 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR5864804 | Pre-XDR-TB | lineage4.3.3 | None | SRR25207227 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723868 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049122 | Sensitive | lineage4.1.2.1 | None | ERR2510698 | MDR-TB | lineage4.5 | pk | SRR18593215 | Pre-XDR-TB | lineage4.8 | None | SRR6964539 | Other | lineage3 | None | SRR1723723 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351332 | Pre-XDR-TB | lineage2.2.1 | None | SRR28409364 | HR-TB | lineage2.2.2 | None | ERR2510538 | Pre-XDR-TB | lineage4.2.1 | pk | ERR3148169 | XDR-TB | lineage4.1.2.1 | mx | ERR4798022 | Pre-XDR-TB | lineage4.1.1.3 | in | SRR29772529 | MDR-TB | lineage4.3.4.2 | None | ERR3014597 | MDR-TB | lineage4.3.1 | tn | SRR12420707 | MDR-TB | lineage4.5 | None | SRR25206858 | MDR-TB | lineage2.2.1 | None | ERR9119509 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813561 | HR-TB | lineage4.1.1.3 | None | ERR11082881 | MDR-TB | lineage4.5 | None | ERR4798226 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798527 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796576 | Pre-XDR-TB | lineage2.2.1 | in | SAMN02599019 | HR-TB | lineage1.1.2 | in | ERR13191050 | Pre-XDR-TB | lineage2.2.2 | None | ERR4810950 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5866329 | Pre-XDR-TB | lineage2.2.1 | None | ERR11466368 | Sensitive | lineage4.4.1.1 | None | ERR775312 | HR-TB | lineage4.1.1.3 | pe | ERR4811155 | Pre-XDR-TB | lineage4.5 | cn | ERR4811343 | MDR-TB | lineage2.2.1 | cn | ERR4811641 | Sensitive | lineage2.2.1 | cn | ERR3273130 | Pre-XDR-TB | lineage4.4.2 | None | ERR4822290 | MDR-TB | lineage4.2.1 | None | ERR4830620 | RR-TB | lineage2.2.1 | tm | ERR502936 | RR-TB | lineage2.2.1 | None | ERR4813576 | RR-TB | lineage4.3.3 | None | SRR13312534 | Pre-XDR-TB | lineage4.3.3 | None | SRR13312538 | Pre-XDR-TB | lineage4.3.3 | None | ERR2516440 | RR-TB | lineage4.1.2.1 | pe | ERR2510213 | HR-TB | lineage4.1.1.3 | pe | ERR2510147 | HR-TB | lineage4.1.1.3 | pe | ERR2510144 | HR-TB | lineage4.1.1.3 | pe | ERR2510222 | HR-TB | lineage4.1.1.3 | pe | ERR4814432 | Sensitive | lineage4.8 | gb | ERR4816455 | Sensitive | lineage4.1.2.1 | gb | ERR4818221 | HR-TB | lineage4.2.1.1 | gb | SRR5709871 | MDR-TB | lineage2.2.1 | th | ERR2041767 | RR-TB | lineage4.1.2.1 | rs | SRR6824644 | MDR-TB | lineage2.2.1 | cn | SRR6824307 | RR-TB | lineage2.2.1 | cn | ERR11044755 | HR-TB | lineage4.1.2.1 | None | SRR29231002 | RR-TB | lineage4.6.1.2 | None | ERR11798649 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR3544740 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119593 | RR-TB | lineage4.1.2.1 | None | SRR6832510 | HR-TB | lineage4.2.1.1 | None | SRR10306032 | MDR-TB | lineage2.2.1 | None | SRR10397238 | Pre-XDR-TB | lineage4.2.1;lineage4.3.3 | None | SRR18593214 | MDR-TB | lineage2.2;lineage4.2.2.2 | None | SRR1723722 | Pre-XDR-TB | lineage2.2.1 | None | SRR21859819 | Sensitive | lineage4.1.2.1 | None | SRR12142356 | Pre-XDR-TB | lineage2.2.1 | None | SRR29385457 | Pre-XDR-TB | lineage2.2.1 | None | SRR8923700 | MDR-TB | lineage4.1.2 | None | SRR20632776 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865659 | HR-TB | lineage4.1.1 | None | ERR4830762 | Pre-XDR-TB | lineage4.5 | ir | SRR28045019 | Pre-XDR-TB | lineage2.2.1 | None | SRR27980506 | HR-TB | lineage4.1.1 | None | DRR261146 | Other | lineage2.2.2 | None | SRR1172329 | HR-TB | lineage1.1.2 | None | ERR4276853 | MDR-TB | lineage4.2.1 | None | ERR5864803 | Pre-XDR-TB | lineage4.3.3 | None | SRR22424939 | Pre-XDR-TB | lineage1.1.3.2 | None | ERR10680049 | RR-TB | lineage5.3 | None | SRR6484859 | HR-TB | lineage4.2.1 | None | SRR29273869 | RR-TB | lineage4.1.2 | None | SRR1723627 | MDR-TB | lineage2.2.1 | cn | SRR1723611 | MDR-TB | lineage2.2.1 | cn | SRR1723828 | RR-TB | lineage2.2.1;lineage4 | cn | SRR6930926 | MDR-TB | lineage1.2.1.2.1 | None | SRR1723840 | HR-TB | lineage2.2.1 | cn | SRR15316365 | MDR-TB | lineage2.2.1 | None | ERR13253368 | Pre-XDR-TB | lineage4.5 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | ERR13249510 | Pre-XDR-TB | lineage4.5 | None | SRR18912071 | HR-TB | lineage2.2.1 | None | ERR13285184 | MDR-TB | lineage4.3.3 | None | ERR11067507 | HR-TB | lineage4.8 | None | SRR1723867 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093952 | Pre-XDR-TB | lineage2.2.1 | None | ERR4195550 | HR-TB | lineage4.3.3 | None | ERR13266409 | Pre-XDR-TB | lineage2.2.1 | None | ERR13245322 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864810 | XDR-TB | lineage4.3.3 | None | SRR1169496 | HR-TB | lineage1.1.2 | None | SRR15316290 | RR-TB | lineage2.2.1 | None | ERR11044862 | HR-TB | lineage4.2.1 | None | ERR972799 | RR-TB | lineage4.1.2.1 | None | ERR13266983 | Pre-XDR-TB | lineage2.2.1 | None | SRR6930915 | RR-TB | lineage2.2.1.2 | None | ERR5864811 | Pre-XDR-TB | lineage4.3.3 | None | SRR29050912 | Sensitive | lineage4.1.1.1 | None | ERR11043447 | MDR-TB | lineage2.2.1 | None | ERR13276014 | HR-TB | lineage4.2.1.1 | None | SRR29385298 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002924 | Other | lineage2.2.1 | None | SRR25207201 | RR-TB | lineage2.2.1 | None | ERR13291130 | Pre-XDR-TB | lineage2.2.1 | None | ERR552410 | RR-TB | lineage2.2.1 | None | SRR25827640 | XDR-TB | lineage2.2.1 | None | ERR4024879 | HR-TB | lineage4.1.1 | None | SRR13312532 | Pre-XDR-TB | lineage4.3.3 | None | SRR13583439 | Other | La1.7.1 | None | SRR10306011 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260064 | RR-TB | lineage2.2.1.2 | None | SRR29017252 | HR-TB | lineage2.2.1 | None | ERR11082236 | MDR-TB | lineage4.8 | None | SRR3544717 | Pre-XDR-TB | lineage4.3.3 | None | SRR6896271 | Other | lineage4.3.4.2.1 | None | SRR25206915 | Pre-XDR-TB | lineage2.2.1 | None | SRR28858706 | MDR-TB | lineage2.2.1 | None | ERR4797338 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4797688 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800317 | Pre-XDR-TB | lineage2.2.1 | in | SRR6356948 | RR-TB | lineage4.2.1 | None | SRR8217880 | Sensitive | lineage2.2.1 | None | SRR10315692 | MDR-TB | lineage2.2.1 | None | SRR25207072 | MDR-TB | lineage2.2.1 | None | ERR11488332 | RR-TB | lineage2.2.1 | None | SRR25515104 | Sensitive | lineage2.2.1 | None | ERR10112871 | RR-TB | lineage4.9.1 | None | SRR6257086 | MDR-TB | lineage4.2.1.1 | ru | SRR11845663 | HR-TB | lineage4.9 | None | SRR8651663 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5866330 | Pre-XDR-TB | lineage2.2.1 | None | SRR6484981 | HR-TB | lineage4.2.1.1 | None | ERR3287876 | RR-TB | lineage4.8 | pe | ERR4810843 | RR-TB | lineage2.2.1 | cn | SRR5486880 | RR-TB | lineage4.3.3 | None | SRR28394016 | RR-TB | lineage4.3.4.2 | None | ERR751388 | HR-TB | lineage4.1.1 | pe | ERR775343 | HR-TB | lineage4.1.1.3 | pe | ERR5864807 | Pre-XDR-TB | lineage4.3.3 | None | ERR5897107 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829417 | Sensitive | lineage4.3.3 | it | ERR7911742 | MDR-TB | lineage4.3.3 | us | ERR4829994 | RR-TB | lineage4.6 | None | ERR751505 | HR-TB | lineage4.1.1.3 | pe | ERR8975167 | HR-TB | lineage4.8.1 | None | ERR8976079 | MDR-TB | lineage4.1.2.1 | None | SRR25827732 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358845 | RR-TB | lineage4.6.1.2 | None | SAMEA2534631 | RR-TB | lineage2.2.1 | uz | ERR4815472 | Sensitive | lineage4.9 | gb | ERR4822153 | HR-TB | lineage4.2.2.2 | gb | SRR29273723 | RR-TB | lineage4.1.2 | None | SRR25207257 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261627 | MDR-TB | lineage4.1.2.1 | None | ERR5864812 | Pre-XDR-TB | lineage4.3.3 | None | SRR25207103 | Pre-XDR-TB | lineage4.5 | None | SRR6824654 | MDR-TB | lineage2.2.1 | cn | ERR10610104 | MDR-TB | lineage2.2.1 | None | ERR552409 | RR-TB | lineage2.2.1 | None | ERR5864808 | Pre-XDR-TB | lineage4.3.3 | None | ERR11044040 | HR-TB | lineage4.8 | None | SRR1162823 | MDR-TB | lineage4.3.3 | None | SRR6824444 | Pre-XDR-TB | lineage2.2.1 | cn | ERR970451 | RR-TB | lineage4.1.2.1 | None | ERR970452 | RR-TB | lineage4.1.2.1 | None | ERR5864809 | Pre-XDR-TB | lineage4.3.3 | None | SRR10306000 | Pre-XDR-TB | lineage2.2.1 | None | SRR15364430 | Pre-XDR-TB | lineage2.2.1 | None | SRR024053 | MDR-TB | lineage4.8 | None | ERR2516243 | MDR-TB | lineage2.2.1 | be | ERR9992798 | HR-TB | lineage2.2.2 | None | SRR12420559 | MDR-TB | lineage2.2.1 | None | SRR13312537 | Pre-XDR-TB | lineage4.3.3 | None | SRR11662388 | Pre-XDR-TB | lineage1.1.1 | None | ERR11044261 | MDR-TB | lineage4.7;lineage4.8 | None | SRR1723596 | Pre-XDR-TB | lineage2.2.1 | None | SRR22528526 | Pre-XDR-TB | lineage4.1.1 | None | ERR11083084 | MDR-TB | lineage4.3.3 | None | ERR5866331 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312539 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806839 | MDR-TB | lineage2.2.1 | None | SRR13312535 | Pre-XDR-TB | lineage4.3.3 | None | DRR130138 | Pre-XDR-TB | lineage4.5 | None | SRR13312531 | Pre-XDR-TB | lineage4.3.3 | None | SRR1723595 | MDR-TB | lineage2.2.1 | None | ERR13258497 | MDR-TB | lineage2.2.1 | None | SRR1723789 | Pre-XDR-TB | lineage2.2.1 | None | SAMN03246428 | RR-TB | lineage2.2.1.1 | None | ERR13264937 | Pre-XDR-TB | lineage4.3.4.2 | None | DRR130103 | Pre-XDR-TB | lineage2.2.1.2 | None | DRR130156 | MDR-TB | lineage2.2.1 | None | ERR4872103 | Pre-XDR-TB | lineage4.3.3 | None | SRR12420734 | MDR-TB | lineage2.2.1 | None | ERR13266706 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368895 | Sensitive | lineage2.2.1 | None | SRR10305972 | Pre-XDR-TB | lineage4.5 | None | SRR28868761 | Other | lineage2.2.1;lineage4.2.2 | None | ERR13249496 | Pre-XDR-TB | lineage4.5 | None | SRR16088527 | XDR-TB | lineage4.3.3 | None | SRR15368767 | RR-TB | lineage2.2.1 | None | ERR2653202 | RR-TB | lineage4.3.4.2 | None | SRR30180267 | MDR-TB | lineage4.5 | None | SRR10040525 | Pre-XDR-TB | lineage2.2.2 | None | ERR10680134 | MDR-TB | lineage6.2.2 | None | SRR29055940 | RR-TB | lineage4.1.1.3 | None | ERR13285088 | MDR-TB | lineage4.7;lineage4.8 | None | SRR6485122 | MDR-TB | lineage2.2.1 | None | SRR28351490 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284994 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR21277349 | Sensitive | lineage2.2.1 | None | ERR4276854 | MDR-TB | lineage4.2.1 | None | SRR13423654 | HR-TB | lineage4.4.2 | None | SRR5153332 | Pre-XDR-TB | lineage4.3.3 | None | SRR29094080 | MDR-TB | lineage4.3.4.2.1 | None | ERR13292245 | HR-TB | lineage2.2.1 | None | ERR4796916 | Pre-XDR-TB | lineage2.2.1 | in | SRR18500585 | Sensitive | lineage4.5 | None | ERR9992794 | Pre-XDR-TB | lineage2.2.2 | None | ERR4796964 | Pre-XDR-TB | lineage2.2.1 | in | ERR552409_ERR552410 | RR-TB | lineage2.2.1 | None | SRR1723694 | RR-TB | lineage2.2.1.1 | None | ERR4799760 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799761 | Pre-XDR-TB | lineage2.2.1 | in | SAMN03246453 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13285113 | MDR-TB | lineage4.8 | None | ERR13254325 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR11488404 | RR-TB | lineage2.2.1 | None | SRR29051313 | Other | La1.7.1 | None | ERR5864805 | Pre-XDR-TB | lineage4.3.3 | None | SRR25207278 | MDR-TB | lineage2.2.1 | None | SRR25206974 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864813 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02414952 | MDR-TB | lineage4.3.3 | se | SRR1166134 | MDR-TB | lineage4.2.1 | ro | ERR13195575 | Pre-XDR-TB | lineage2.2.2 | None | SRR1166319 | MDR-TB | lineage4.2.1 | ro | SRR12416827 | MDR-TB | lineage2.2.1 | None | SRR13312530 | Pre-XDR-TB | lineage4.2.1;lineage4.3.3 | None | SRR6785396 | Sensitive | lineage4.1 | None | ERR4811286 | MDR-TB | lineage2.2.1 | cn | ERR3287762 | MDR-TB | lineage4.4.1.1 | pe | SAMN03246341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810990 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4553588 | HR-TB | lineage2.2.1 | None | SRR9971358 | MDR-TB | lineage2.2.1 | None | ERR2707193 | RR-TB | lineage4.6.1.2 | cd | ERR4830503 | MDR-TB | lineage2.2.1 | None | ERR779859 | HR-TB | lineage4.1.1.3 | pe | ERR4829632 | Sensitive | lineage4.3.3 | it | SRR15399227 | Other | lineage4.3.4.1 | None | ERR5864806 | Pre-XDR-TB | lineage4.3.3 | None | ERR1199124 | RR-TB | lineage4.6.1.2 | cd | ERR4816118 | Sensitive | lineage4.9 | gb | ERR4820750 | Sensitive | lineage4.1.2.1 | gb | ERR4820905 | Sensitive | lineage4.8 | gb | ERR2515426 | Other | lineage4.3.4.2.1 | za | SRR5709799 | Pre-XDR-TB | lineage2.2.1 | th | SRR6824352 | MDR-TB | lineage2.2.1 | cn | SRR6824350 | MDR-TB | lineage2.2.1 | cn | SRR6824371 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824364 | Pre-XDR-TB | lineage2.2.1;lineage4 | cn | ERR9121598 | HR-TB | lineage4.3.3 | None | ERR13249751 | Pre-XDR-TB | lineage4.5 | None | ERR4872195 | RR-TB | lineage4.1.2.1 | None | DRR130196 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
