Run ID: ERR4816118
Sample name:
Date: 20-10-2023 08:00:47
Number of reads: 2246098
Percentage reads mapped: 98.34
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | R | rrs n.888G>A (0.48) |
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.48 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.53 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154200 | p.Tyr638His | missense_variant | 1.0 |
katG | 2155745 | p.Gly123Arg | missense_variant | 1.0 |
ahpC | 2726142 | c.-51G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |