lineage | Count |
---|---|
lineage6.1.3 | 1 |
88 | |
lineage4 | 56 |
lineage4.9 | 44 |
lineage2.2.1 | 12 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage3 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2.1.1 | 3 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2.2 | 5 |
lineage2 | 1 |
lineage1.1.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.3.3 | 1 |
lineage4.3.4 | 1 |
lineage4.1.2 | 2 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.1 | 1 |
lineage4.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.2.1 | 1 |
lineage5.2 | 2 |
La2 | 1 |
lineage4.6.2.2 | 2 |
lineage4.2.1.1 | 1 |
lineage4.3.2.1 | 1 |
lineage1.1.2 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
La1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.9.1 | 1 |
lineage4.5 | 1 |
lineage4.8;lineage4.1 | 1 |
spoligotype | Count |
---|---|
None | 242 |
ID | Drug resistance | Lineage | Country iso2 | ERR9787153 | Other | lineage6.1.3 | None | SRR1174897 | HR-TB | None | ERR987722 | HR-TB | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR990545 | Other | lineage3 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | ERR158583 | HR-TB | None | SRR25515469 | Sensitive | lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26400024 | HR-TB | lineage2.2.1 | None | SRR21662013 | Other | lineage2.2.1 | None | ERR552308 | Sensitive | lineage4.3.3 | None | SRR3675522 | Other | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675234 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR4813534 | Sensitive | lineage4.1.2 | None | ERR176740 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR181744 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675510 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | ERR212034 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR212123 | Other | None | SRR3675571 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4816466 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR1035162 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4818929 | HR-TB | None | SRR5341418 | Other | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341315 | Sensitive | None | ERR1023509 | Other | None | SRR5341313 | HR-TB | None | SRR5341456 | Other | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341330 | HR-TB | None | ERR2693231 | Other | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR5341470 | HR-TB | None | SRR6046096 | Other | lineage4.1.2.1 | None | SRR6045519 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693257 | Other | None | ERR2660539 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046362 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046133 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6045399 | Other | None | SRR6046299 | HR-TB | None | SRR6046492 | Other | None | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4811635 | Sensitive | lineage2.2.1 | cn | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR502524 | HR-TB | La2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | SRR833113 | HR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR502889 | Other | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323053 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323108 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR133986 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283040 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3439432 | Other | None | ERR3283055 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797036 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR4024991 | Other | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4830405 | HR-TB | lineage2.2.1 | vn | ERR4799025 | Pre-XDR-TB | None | ERR6866410 | Sensitive | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR6866022 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR6866639 | Other | None | ERR245758 | Other | lineage4.9.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119425 | HR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None |
---|