Rv2477c - c.621T>C


Drug resistance types
34 Sensitive 14 RR-TB 90 HR-TB 42 MDR-TB 4 Pre-XDR-TB 2 XDR-TB 91 Other
lineage Counts
lineage Count
lineage2.2.1.1 5
lineage4.9 66
La3;lineage4.9 10
lineage1.1.2 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage1.1.3.1 1
lineage4.1.3 2
lineage2.1;lineage6.3 2
lineage2.1 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 5
M.canetti;lineage2.1;lineage4.9 20
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage2.2 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage2.1;lineage2.2;lineage6.3 1
lineage4.1.2.1 9
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage1.1 1
M.canetti;lineage2.1 1
La3;M.canetti;lineage2.1;lineage4.9 9
lineage4.8;lineage4.9 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.6.2.2 4
lineage4.9;lineage7 3
lineage4.9;lineage6.3 2
lineage2.1;lineage4.9;lineage6.3 8
La1.8.1 1
lineage4.2;lineage4.9 3
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage4.8 1
lineage2.2.1.2;lineage7 1
10
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 2
M.canetti;lineage4.9;lineage9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
M.canetti;lineage2.1;lineage4 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage3 3
M.canetti;lineage4.2;lineage4.9 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage2.2.1 9
lineage4 3
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.1.1.1 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.3.2.1 2
La1.7.1;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9 7
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1;lineage3 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1;lineage4.9 1
La1.7;lineage4.9 2
M.canetti;lineage4.9 3
M.canetti;lineage2.2 3
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;M.canetti;lineage4.9 1
La3;lineage2.1;lineage6.3 1
lineage4.6.1.1 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage3.1.2.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.2 1
La3;lineage2.1;lineage4.9;lineage6.3 2
lineage1.1.2;lineage4 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage4.2 1
La3;M.canetti;lineage3.1 1
lineage1.1.1 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.6.4;lineage4.9 1
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2 1
La1.7.X-unk4;lineage4.9 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.9;lineage9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage6.3 1
spoligotype Counts
spoligotype Count
None 277
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1181091 Other lineage2.2.1.1 None
SRR12416842 HR-TB lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR4798139 RR-TB lineage1.1.2 None
ERR6866639 Other lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR14782405 HR-TB lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR4769452 Other lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR4799513 HR-TB lineage2.2 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR9786656 Sensitive lineage4.1.2.1 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR1180147 Other lineage2.2.1.1 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4024991 Other lineage4.8;lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28119752 Other lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
SRR12142341 HR-TB lineage2.1 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR9786421 Other lineage4.1.2.1 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR29231479 RR-TB lineage4.9 None
ERR6866022 Other lineage4.8;lineage4.9 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046878 Other lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR1063858 HR-TB lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29096541 Other lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786569 Other lineage4.8 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR137286 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR18213713 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR1063896 Sensitive None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR26399973 Other La3;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4821053 RR-TB lineage3 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6358979 Other lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045548 Sensitive lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1181251 Other lineage2.2.1 None
ERR4798099 Other lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR2027263 Other lineage4 None
ERR3797015 HR-TB lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR6789626 Other None
SRR6045347 Other lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6511621 Sensitive lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
SRR3675236 Other None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4800341 Other lineage3 None
ERR4816466 HR-TB lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR8975532 HR-TB lineage4.3.2.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR5341308 Sensitive lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR4797264 Sensitive lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR7131023 Other lineage4.1.2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR11662690 HR-TB lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28351339 MDR-TB lineage4 None
ERR9787197 Other None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4818536 Other lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR9786671 Other None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786604 Other None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR2693252 Sensitive lineage4.9 None
ERR4796254 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR4407463 HR-TB None
ERR9786694 Other lineage4.1.2.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR1158918 Sensitive lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675270 Other lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR502511 Sensitive lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR9786682 Other lineage4.1.2.1 None
SRR29096943 Sensitive lineage3.1.2.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
SRR6045053 Other lineage4 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
ERR6866410 Sensitive lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR5341300 HR-TB lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR5341384 HR-TB lineage4.9 None
ERR3283031 Sensitive La3;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR4797184 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283011 Other La3;lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR3804169 HR-TB lineage4.1.3 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
SRR3675246 Other lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR26937107 MDR-TB lineage2.2.1 None
ERR736834 Sensitive lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1183144 Other lineage2.2.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR29097066 Sensitive lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
SRR5341299 HR-TB lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9786843 Other None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341387 Other lineage4.9 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR28119805 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR4819462 Sensitive lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SAMN02585910 Other lineage2.2.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR20969677 HR-TB La3;lineage2 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR702405 Sensitive lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4769450 Other lineage4.9 None
ERR124636 Sensitive lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR751326 Other lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR5341453 Other lineage4.9 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR3797064 Other La3;lineage4.9 None