Rv0006 - c.1941A>C
Drug resistance types
57 Sensitive
3 RR-TB
145 HR-TB
8 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
73 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 37 |
| lineage4.3.4.1 | 1 |
| 117 | |
| lineage1.2.1.2.1 | 1 |
| La1.7.1 | 1 |
| lineage3 | 3 |
| lineage3;lineage2.1 | 1 |
| lineage2.2.1 | 11 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage2.2 | 7 |
| lineage4.1 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4 | 63 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.9;lineage2.1 | 1 |
| lineage3.1 | 2 |
| lineage1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.3.4.2.1 | 2 |
| La2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| La1.8.1 | 3 |
| lineage6.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.2 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.2 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 293 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13861532 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR13861556 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR17658565 | Other | lineage3 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR8692898 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675502 | Other | None | SRR3675482 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675270 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | ERR176651 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675383 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4817347 | HR-TB | lineage4 | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816656 | HR-TB | None | ERR1035162 | Other | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341456 | Other | None | ERR4819462 | Other | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR278594 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5535933 | HR-TB | None | SRR6045010 | Other | lineage4 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044780 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046482 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323037 | HR-TB | lineage4 | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR294248 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR294266 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR323041 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323053 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1035122 | Sensitive | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283028 | Other | None | ERR3283032 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3439432 | Other | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769521 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798406 | HR-TB | None | ERR4797264 | Sensitive | None | ERR6359070 | Other | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR6358979 | Other | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866022 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | ERR987722 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR10808399 | Sensitive | lineage4 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None |
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