Rv3596c - c.1615C>T
Drug resistance types
21 Sensitive
3 RR-TB
96 HR-TB
7 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
41 Other
lineage Counts
| lineage | Count |
|---|---|
| 70 | |
| lineage4 | 8 |
| lineage4.9 | 20 |
| lineage2.2.1 | 16 |
| lineage4.8 | 4 |
| lineage1.1 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.3.4.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.4.2 | 1 |
| La1.7.X-unk4 | 1 |
| La1.8.1 | 2 |
| lineage4.6.2.2 | 3 |
| lineage1.1.2 | 1 |
| lineage2.2 | 2 |
| lineage4.3.3 | 3 |
| lineage4.9.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage3 | 6 |
| lineage2.2.1.2 | 2 |
| lineage4.5 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.9;La1 | 1 |
| La1.2 | 1 |
| lineage4.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4;lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 172 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046133 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046299 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046397 | Other | None | ERR278594 | HR-TB | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323036 | HR-TB | None | ERR323041 | HR-TB | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR294248 | HR-TB | None | ERR502889 | Other | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | ERR4831638 | Sensitive | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1034634 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3468544 | HR-TB | None | ERR1034652 | Other | None | ERR133986 | HR-TB | None | ERR3439432 | Other | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3445504 | HR-TB | None | ERR3797016 | HR-TB | None | ERR400336 | Sensitive | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798406 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR6359045 | HR-TB | None | ERR8976043 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9119669 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR13423544 | Other | lineage4.5 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861376 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13837544 | Sensitive | lineage4.9 | None | SRR13861235 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR13861573 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR6207287 | Sensitive | lineage4.1.1.3 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR3675486 | HR-TB | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR23961549 | Other | La1.2 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR4813861 | Other | lineage4.3.3 | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4814582 | HR-TB | lineage3 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675542 | Other | lineage4.9 | None | SRR3675502 | Other | None | SRR3675510 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | ERR4816470 | Other | lineage3 | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675550 | Other | None | ERR2229158 | Sensitive | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816656 | HR-TB | None | SRR5341418 | Other | None | ERR4818929 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341456 | Other | None | ERR1023509 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2514552 | Sensitive | lineage3 | None | SRR6045555 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5535933 | HR-TB | None |
|---|
