Rv3596c - c.1615C>T


Drug resistance types
19 Sensitive 29 RR-TB 59 HR-TB 81 MDR-TB 3 Pre-XDR-TB 0 XDR-TB 53 Other
lineage Counts
lineage Count
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.8 5
M.canetti;lineage2.2 1
M.canetti;lineage2.1;lineage4.9 23
lineage4.9 49
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3 4
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage2.2.1 15
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage4.1.2.1 13
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage2.2 2
La1.2 1
La3;M.canetti;lineage3.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.4.1.1 2
lineage2.1;lineage4.9;lineage7 1
lineage4.3.4.2.1 2
lineage4.2;lineage4.9 3
M.canetti;lineage2.1;lineage4 1
lineage4.9.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.9;lineage7 4
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 2
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.6.2.2 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.2 1
lineage2.2.1.2 2
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage1.2.1.2.1 1
lineage4.3.3 3
1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.6.4;lineage4.9 2
lineage4.9;lineage6.1.3 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;M.canetti;lineage4.9 2
lineage2.1;lineage4.9 6
La1.6;La3;M.canetti;lineage4.2.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 2
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage1.1.2;lineage4 1
lineage4.1.1.3 2
M.canetti;lineage1 1
lineage2.1;lineage4.1.4;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.2.1 1
La1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
lineage4 1
lineage4.5 1
lineage4.1.2.1.1 1
lineage4.3.2.1 1
lineage4.6.4;lineage4.9 1
lineage4.3.1;lineage4.9;lineage6 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage2.1 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2.1;lineage2.2;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage4.2 1
lineage1.1 1
lineage1.1.1;lineage4 1
La1.7.1 1
M.canetti;lineage2.1;lineage3 1
lineage4.4.2 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;M.canetti;lineage4.8;lineage4.9 1
La1.8.1 2
lineage2.2.1;lineage4 1
lineage4.3.4.1 1
M.canetti;lineage4.9 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 244
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786444 Sensitive lineage4.8 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13861381 HR-TB lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4816470 HR-TB lineage3 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797043 Sensitive lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR9971270 RR-TB lineage2.2.1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675280 RR-TB lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4819877 HR-TB lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR23961549 Other La1.2 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR6046485 Other lineage4.9 None
ERR4816151 Sensitive lineage4.8 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR1173453 Other lineage4.4.1.1 None
SRR3675243 Other lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR4819241 Other lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR1167055 Other lineage4.1.2.1 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR245758 Other lineage4.9.1 None
ERR4821053 RR-TB lineage3 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR6045548 Other lineage4.9 None
SRR3675446 RR-TB lineage4.9 None
ERR5917710 Other lineage4.1.2.1 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR2229143 RR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR3801503 Other lineage4.6.2.2 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR13861397 HR-TB lineage4.9 None
ERR1023509 Other lineage4.9 None
SRR6044815 RR-TB lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1162864 MDR-TB lineage4.1.2.1 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR13861332 Other lineage4.9 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
SRR5341456 Other lineage4.9 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9119096 RR-TB lineage4.3.3 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046382 Sensitive lineage2.2.1 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675586 Other M.canetti;lineage4.6.4;lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR1049675 HR-TB lineage2.2.1 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
SRR13861235 HR-TB lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797083 RR-TB lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
ERR2693228 RR-TB lineage4.9 None
ERR13292526 Other lineage4.9 None
SRR6832787 Other lineage2.2.1 None
ERR387051 RR-TB lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR14782054 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045219 HR-TB lineage4.9 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6207287 Sensitive lineage4.1.1.3 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR4816551 MDR-TB lineage4.1.1.3 None
SRR1166821 RR-TB lineage4.1.2.1 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR5709967 MDR-TB lineage2.2.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR23961542 Other La1;lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR13423544 Other lineage4.5 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR8975532 HR-TB lineage4.3.2.1 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR9786711 Sensitive lineage4.6.2.2 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR4816656 Other lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
SAMN02414850 Other lineage4.1.2.1 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR5908228 RR-TB lineage4.3.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4813861 Other lineage4.3.3 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR3283018 HR-TB lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
SRR3675312 Sensitive lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR6359082 Other lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR7240492 MDR-TB La1.7.1 None
SRR6046594 Other lineage4.9 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
ERR4811493 HR-TB lineage4.9 None
DRR188519 Other lineage4.4.2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
SRR6045217 Sensitive lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3439432 Other M.canetti;lineage4.6.4;lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR1049674 HR-TB lineage2.2.1 None
ERR176580 Sensitive lineage4.3.4.2.1 None
ERR3468607 Other lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR3675507 RR-TB lineage4.9 None
SRR13423649 Other lineage2.2.1 None
ERR9786076 Other lineage3 None
SRR1062919 HR-TB lineage2.2.1 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
SRR1162740 Other lineage4.1.2.1 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR1140724 Other lineage2.2.1 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR11466070 Sensitive lineage4.3.4.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675487 MDR-TB M.canetti;lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
SRR1791696 RR-TB La1.8.1 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675269 RR-TB lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None