Rv3245c - c.-419G>C

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
27 Sensitive 4 RR-TB 17 HR-TB 12 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 25 Other
lineage Counts
lineage Count
lineage4.9 46
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.3.2.1 1
lineage2.2.1 8
lineage4.1.2 1
lineage2.2.1.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
La1;lineage4.9 2
lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
2
La1.6;La3;M.canetti;lineage4.2.2 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
M.canetti;lineage4.2;lineage4.9 1
lineage4 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.7.1 1
lineage1.1.2 1
lineage4.2.1.1 1
lineage4.8 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage4.2 1
La1.7;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.9 1
La1.8.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
lineage4.3.4.2.1 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 89
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR323037 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR5341308 Sensitive lineage4.9 None
SRR9971112 Other lineage2.2.1 None
SRR9970980 Other lineage4.1.2 None
ERR323085 Sensitive lineage4.9 None
ERR736834 Sensitive lineage4.9 None
SRR1180996 Sensitive lineage4.9 None
ERR4831621 MDR-TB lineage2.2.1.1 None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR4796254 Sensitive lineage4.9 None
ERR323062 Sensitive lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR323066 Sensitive lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR1063896 Sensitive None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR1159378 Other lineage4.9 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
SRR5341300 HR-TB lineage4.9 None
SRR3675446 RR-TB lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR5341384 HR-TB lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR4810624 HR-TB lineage2.2.1 None
ERR4797184 Sensitive lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR5341461 HR-TB lineage4.9 None
ERR4819933 Sensitive lineage4.9 None
SRR10315567 Other lineage2.2.1 None
ERR3273109 HR-TB lineage4 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR751326 Other lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR4799378 Sensitive lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR6866639 Other lineage4.9 None
SRR5341310 Other lineage1.1.2 None
SRR6832178 HR-TB lineage4.2.1.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR9970979 Sensitive lineage4.8 None
SRR5341467 Other lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR4797264 Sensitive lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR4815815 Sensitive lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675586 Other M.canetti;lineage4.6.4;lineage4.9 None
SRR6045359 Sensitive lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4798823 HR-TB None
ERR502511 Sensitive lineage4.9 None
ERR9119669 HR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR1791747 Other La1.8.1 None
ERR702405 Sensitive lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR4798099 Other lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR5341366 Sensitive lineage4.9 None
ERR6359069 Sensitive lineage4.9 None
SRR6511621 Sensitive lineage4.9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR23961542 Other La1;lineage4.9 None