Rv0005 - c.102T>C
Drug resistance types
4 Sensitive
3 RR-TB
16 HR-TB
10 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| 2 | |
| lineage4.9 | 15 |
| lineage2.2.1 | 2 |
| La3;lineage4.9 | 3 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| M.canetti;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 61 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| ERR987722 | MDR-TB | None | |
| ERR234659 | Other | None | |
| SRR1180226 | HR-TB | lineage4.9 | None |
| SRR6832787 | Sensitive | lineage2.2.1 | None |
| SRR1167384 | Other | La3;lineage4.9 | None |
| ERR502524 | HR-TB | lineage4.9;lineage6.3 | None |
| SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None |
| SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR3797028 | HR-TB | M.canetti;lineage4.9 | None |
| ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
| ERR1063855 | Other | lineage4.9 | None |
| SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| ERR736867 | Other | lineage2.1;lineage4.9 | None |
| SRR1183111 | HR-TB | lineage4.9 | None |
| SRR1183145 | Other | lineage2.2.1 | None |
| SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
| ERR3283042 | Other | lineage4.9 | None |
| ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None |
| SRR1172310 | HR-TB | lineage4.9 | None |
| ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None |
| SRR6832178 | HR-TB | lineage4.2.1.1 | None |
| SRR3675446 | RR-TB | lineage4.9 | None |
| ERR502510 | Sensitive | lineage4.9 | None |
| SRR1174897 | MDR-TB | lineage4.9;lineage9 | None |
| ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR124636 | Sensitive | lineage4.9 | None |
| SRR1184380 | Other | lineage2.1;lineage4.9 | None |
| ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
| SRR6044942 | HR-TB | lineage4.9 | None |
| ERR4817731 | HR-TB | lineage4.9 | None |
| ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
| ERR1023509 | Other | lineage4.9 | None |
| ERR926164 | Other | lineage4.9 | None |
| ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
| SRR6046225 | Other | lineage4.9;lineage6.3 | None |
| ERR403298 | MDR-TB | M.canetti;lineage4.2 | None |
| ERR3283018 | HR-TB | lineage4.9 | None |
| SRR1183106 | RR-TB | lineage2.2.1.1 | None |
| SRR6045233 | Other | M.canetti;lineage4.9 | None |
| ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| SRR3675502 | Sensitive | lineage4.9 | None |
| ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None |
| SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
| ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None |
| ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
| SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR323039 | HR-TB | La2;lineage4.9 | None |
| SRR1165628 | Other | La3;lineage4.9 | None |
| ERR926163 | Other | lineage4.9 | None |
| SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR28119827 | Other | La3;lineage4.9 | None |
| ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None |
| ERR323043 | Other | lineage2.1;lineage4.9 | None |
| SRR23961559 | Other | La1.7;lineage4.2 | None |
