Rv0006 - c.2343T>C
Drug resistance types
24 Sensitive
1 RR-TB
107 HR-TB
9 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| 114 | |
| lineage4 | 31 |
| lineage2.2.1 | 3 |
| lineage4.1.2.1 | 3 |
| lineage3.1 | 3 |
| lineage4.2.1.1 | 1 |
| La2 | 1 |
| lineage1.1 | 1 |
| lineage4.9 | 7 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage2.2 | 3 |
| lineage3.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage2 | 2 |
| La3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.5 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage4.1 | 1 |
| lineage4.3.4 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 184 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6325447 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR5311081 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR294266 | HR-TB | None | ERR323036 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR3077978 | Other | lineage1.1 | None | ERR4831117 | HR-TB | None | ERR5311099 | HR-TB | None | SRR8217918 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323063 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR7585435 | Other | lineage4.9 | None | ERR323039 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR1034652 | Other | None | ERR067681 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3797016 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3468544 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR3797083 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4798406 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR702406 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR6358837 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | SRR069989 | HR-TB | lineage2 | None | SRR1169306 | Other | None | SRR10808399 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1172951 | Other | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173778 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173400 | Other | None | SRR1173788 | Other | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR1175074 | MDR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1180996 | HR-TB | lineage4 | None | SRR1184388 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR13861305 | Other | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR14801749 | Sensitive | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR3675502 | Other | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR158583 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | ERR176643 | HR-TB | None | ERR181744 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR212034 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3675574 | HR-TB | None | SRR5341453 | Sensitive | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4818929 | HR-TB | None | ERR4816656 | HR-TB | None | ERR1035162 | Other | None | SRR5341387 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341418 | Other | None | SRR5341470 | HR-TB | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR2693239 | HR-TB | None | ERR278594 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6046362 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None |
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