Rv0001 - c.1449G>A


Drug resistance types
5 Sensitive 6 RR-TB 20 HR-TB 25 MDR-TB 3 Pre-XDR-TB 0 XDR-TB 63 Other
lineage Counts
lineage Count
lineage2.1;lineage4.9;lineage6.3 8
lineage3.1 1
lineage4.9 13
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage4.9;lineage6.3 4
lineage1.2.2.2 2
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2.1;lineage4.9 13
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9 1
lineage2.1 3
lineage1.2.1.2.1 1
lineage2.2.1 8
M.canetti;lineage4.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
15
lineage3 2
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.7 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage4.4.1.1 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.3.3 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.1.3 2
lineage4.8.1 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
La3 2
lineage2.2.1.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage6.2.1 3
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.6.1.1 1
lineage4 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
La3;lineage2 1
lineage4.8 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
La3;lineage2.1;lineage6.3 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
spoligotype Counts
spoligotype Count
None 122
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR4796584 Sensitive lineage1.2.2.2 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
SRR1196566 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR21733136 Sensitive lineage1.2.1.2.1 None
SRR1180172 RR-TB lineage2.2.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR1183144 RR-TB lineage2.2.1 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR9117709 Other None
SRR7496517 Other None
SRR3675236 Other None
ERR4800341 HR-TB lineage3 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR702406 Other lineage2.1 None
SRR1184312 Other lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1172951 Other lineage4.9 None
SRR1165699 Other lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR9786611 HR-TB lineage4.1.3 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR1172817 Other La3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR9786671 Other None
SRR1184372 MDR-TB None
ERR4816999 Other None
ERR3170431 Sensitive lineage6.2.1 gh
ERR3170430 Sensitive lineage6.2.1 gh
SRR1196583 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR1173778 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR3804169 HR-TB lineage4.1.3 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR3675221 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR4814352 Other lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR4819781 Other lineage2.2.1 None
SRR1180147 RR-TB lineage2.2.1.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR2229542 Other lineage4.8 None
ERR4797588 MDR-TB lineage3 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
SRR6789626 Other None
SRR7535086 Other None
SRR18213713 HR-TB None
SRR1172857 Other None
ERR4407463 HR-TB None
ERR9787197 Other None
SRR1196768 MDR-TB None
ERR4817060 Other None
ERR3170429 Sensitive lineage6.2.1 gh
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR1169194 Other lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None