Rv0682 - c.246G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
55 Sensitive
15 RR-TB
22 HR-TB
5 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 8 |
| lineage4.9 | 67 |
| lineage2.2.1 | 11 |
| lineage3 | 4 |
| lineage4.1.1.3 | 1 |
| La1.7.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| 2 | |
| lineage4.3.3 | 2 |
| lineage4.8 | 5 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.8.1 | 1 |
| lineage2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage2.2.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4 | 2 |
| lineage4.1.2.1 | 1 |
| lineage1.2.2.2 | 1 |
| La1.8.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 129 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4817204 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4816852 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4819546 | HR-TB | lineage3 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6045555 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3283028 | Other | La3;lineage4 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None |
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