lineage | Count |
---|---|
lineage4.6.1.2 | 3 |
lineage2.2.1 | 19 |
lineage4.9 | 17 |
lineage4.8 | 6 |
3 | |
lineage4.4 | 1 |
lineage4.2.1 | 3 |
La1.7.1 | 1 |
lineage4.1.2.1 | 2 |
lineage3 | 3 |
lineage4.4.1.1 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.3.3 | 2 |
lineage4.8.2 | 1 |
lineage3.1.1 | 1 |
lineage4 | 1 |
lineage4.3.2.1 | 1 |
lineage4.7 | 1 |
lineage4.3.4.2.1 | 1 |
La1.7.X-unk4 | 1 |
lineage4.1.1.3 | 1 |
lineage4.6.5 | 1 |
lineage2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 74 |
ID | Drug resistance | Lineage | Country iso2 | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | ERR2432997 | Other | lineage4.8 | None | ERR1750907 | RR-TB | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4819002 | HR-TB | lineage4.8 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR2509886 | RR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | ERR1023509 | Other | None | SRR6045267 | RR-TB | lineage4 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None |
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