Rv3596c - c.642G>C
Drug resistance types
39 Sensitive
41 RR-TB
14 HR-TB
28 MDR-TB
11 Pre-XDR-TB
1 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 38 |
| lineage4.9;La1.3 | 1 |
| La1.2 | 1 |
| La1.3 | 1 |
| lineage2.2.1 | 11 |
| lineage1.2.2.2 | 1 |
| lineage2.2.2 | 1 |
| 39 | |
| lineage4.1.2.1 | 3 |
| lineage4.5 | 1 |
| lineage4.7 | 1 |
| lineage3.1.1 | 3 |
| lineage4.3.3 | 3 |
| lineage3 | 8 |
| lineage4.8 | 5 |
| lineage4.3.4.2.1 | 4 |
| lineage4.8;lineage4.3.3 | 3 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4 | 7 |
| La1.6 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1 | 1 |
| La1.4 | 1 |
| lineage4.4.1.1 | 4 |
| lineage1.1.3.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.1 | 1 |
| lineage1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.8.2 | 1 |
| lineage4.1.1 | 1 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.8.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 160 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769517 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR9125480 | Sensitive | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR7451301 | Sensitive | None | ERR752229 | Other | lineage4.5 | None | ERR7451300 | Sensitive | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175473 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR16058668 | Sensitive | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR21675425 | HR-TB | lineage4.8 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22179528 | Sensitive | None | SRR24061599 | Sensitive | None | SRR24061598 | Sensitive | None | SRR24061597 | Sensitive | None | ERR4815550 | Other | lineage4 | None | SRR24061600 | Sensitive | None | ERR4815310 | Other | None | ERR4815361 | Sensitive | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816019 | Sensitive | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816232 | Other | lineage4 | None | ERR4817181 | Sensitive | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2432997 | Other | lineage4.8 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817915 | RR-TB | lineage4.9 | None | SRR5818653 | Sensitive | dj | ERR2446566 | Other | lineage4.1 | None | ERR4818126 | RR-TB | lineage1 | None | SRR5818661 | Sensitive | dj | SRR5818614 | Sensitive | dj | SRR5818668 | Sensitive | dj | SRR5818567 | Sensitive | dj | SRR5818652 | Sensitive | dj | SRR5818676 | Sensitive | dj | ERR4818261 | Other | lineage1.1.2 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4819198 | Other | lineage2.2.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4820256 | Other | lineage2.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819927 | Sensitive | None | ERR1023509 | Other | None | ERR4820833 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4821796 | Other | lineage4.1.1 | None | ERR4821046 | Sensitive | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | SRR5818605 | Sensitive | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR1213930 | Other | lineage4.3.2 | pe | SRR5818685 | Sensitive | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR11465830 | Sensitive | lineage4.9 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR036207 | Other | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR11465829 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3597003 | Sensitive | None | ERR3597005 | Sensitive | None | ERR3597001 | Sensitive | None | ERR3597002 | Sensitive | None | ERR3597006 | Sensitive | None | ERR3597007 | Sensitive | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797046 | HR-TB | None |
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