Rv3596c - c.642G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
83 Sensitive
30 RR-TB
13 HR-TB
23 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti | 9 |
| La1;lineage4.9 | 1 |
| lineage4.4.1.1 | 2 |
| lineage3 | 7 |
| lineage4.9 | 29 |
| M.canetti | 74 |
| lineage3.1.1 | 3 |
| lineage4.8 | 7 |
| lineage4.3.3;lineage4.8 | 3 |
| lineage2.2.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2.1 | 11 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La2;M.canetti | 1 |
| lineage1.2.2.2 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.2.1 | 2 |
| La1.8.1 | 1 |
| La1.4 | 1 |
| La1.7.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2;lineage4 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 191 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1043163 | Other | La3;M.canetti | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3597003 | Sensitive | M.canetti | None | SRR1173310 | Other | lineage3.1.1 | None | ERR3597005 | Sensitive | M.canetti | None | SRR1140716 | Other | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | ERR11465829 | Sensitive | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR4815079 | RR-TB | lineage3 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR266107 | Other | M.canetti | None | ERR313117 | Sensitive | M.canetti | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR266125 | Other | M.canetti | None | ERR266124 | Other | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR313113 | Sensitive | M.canetti | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR3597001 | Sensitive | M.canetti | None | ERR3597002 | Sensitive | M.canetti | None | ERR3597006 | Sensitive | M.canetti | None | ERR3597004 | Sensitive | M.canetti | None | ERR3597007 | Sensitive | M.canetti | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4817181 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR22179528 | Sensitive | M.canetti | None | SRR16058668 | Sensitive | M.canetti | None | SRR16058674 | Sensitive | M.canetti | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR4816019 | Sensitive | M.canetti | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR24061598 | Sensitive | M.canetti | None | SRR10177260 | Other | M.canetti | None | ERR3283006 | RR-TB | lineage4.9 | None | SAMEA2533665 | Sensitive | M.canetti | None | SAMEA2534556 | Sensitive | M.canetti | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4817915 | Other | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR5818567 | Other | M.canetti | dj | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR551055 | Sensitive | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR552304 | Sensitive | M.canetti | None | ERR7451300 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR29056248 | Sensitive | M.canetti | None | SRR1049672 | Other | lineage3 | None | SRR5818685 | Sensitive | M.canetti | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR18289195 | Sensitive | M.canetti | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR16278274 | Other | La1.4 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR266109 | Sensitive | M.canetti | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR552305 | Sensitive | M.canetti | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR1175473 | Other | lineage4.9 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1062918 | Other | lineage3 | None | SRR10177262 | Sensitive | M.canetti | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR266121 | Sensitive | M.canetti | None | SRR24061597 | Sensitive | M.canetti | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR11465830 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR10522783 | Sensitive | M.canetti | None | SRR10522763 | Sensitive | M.canetti | None | ERR9125475 | Sensitive | M.canetti | None | ERR9125480 | Sensitive | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | SRR5818614 | Sensitive | M.canetti | dj | ERR313115 | Sensitive | M.canetti | None | ERR313116 | Sensitive | M.canetti | None | ERR313114 | Sensitive | M.canetti | None | ERR4821046 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR551057 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | SRR10177261 | Sensitive | M.canetti | None | ERR551056 | Sensitive | M.canetti | None | ERR266110 | Other | M.canetti | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR266108 | Sensitive | M.canetti | None | SRR6650709 | Sensitive | M.canetti | None | SRR10177259 | Other | M.canetti | None | ERR2446566 | Other | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR266106 | Sensitive | M.canetti | None | ERR502473 | RR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR266120 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR551181 | Sensitive | M.canetti | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR1023509 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR10177263 | Sensitive | M.canetti | None | SRR10177258 | Other | M.canetti | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR5818661 | Other | M.canetti | dj | SRR1173740 | Other | lineage3;lineage4 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR5818676 | Other | M.canetti | dj | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR551180 | Sensitive | M.canetti | None | SAMEA6086630 | Sensitive | M.canetti | None | SAMEA2533757 | Sensitive | M.canetti | None |
|---|
