EBG00000313325 - n.828T>A
Drug resistance types
9 Sensitive
12 RR-TB
10 HR-TB
9 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
139 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 19 |
| lineage3 | 20 |
| lineage2.2.2 | 1 |
| lineage4.1.2.1 | 25 |
| lineage4.8 | 18 |
| lineage1.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.3.2 | 4 |
| lineage1.1.2 | 6 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.3 | 7 |
| lineage1.2.1.2 | 2 |
| lineage5.1.4 | 1 |
| lineage3.1.3 | 1 |
| lineage4.4.2 | 1 |
| lineage1.2.1.2.1 | 4 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage3.1.2 | 2 |
| lineage4.9 | 6 |
| lineage4.5 | 3 |
| lineage4.6.5 | 1 |
| lineage4.7 | 6 |
| lineage4.2.1 | 3 |
| lineage4.1.1.3.1 | 4 |
| lineage4.1 | 2 |
| lineage2.2 | 1 |
| lineage4 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.6.3 | 1 |
| lineage4.1.1.3 | 2 |
| 3 | |
| lineage1.1.3.1 | 3 |
| lineage4.6 | 1 |
| lineage4.6.2.2 | 3 |
| lineage1.1.3 | 1 |
| lineage4.1.1 | 3 |
| lineage4.2.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4;lineage3.1.2.1 | 1 |
| lineage4.2.1.1 | 1 |
| La1.8.1 | 1 |
| La3 | 1 |
| lineage4.4 | 1 |
| lineage6 | 1 |
| lineage1.2.2.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3.1 | 1 |
| lineage4.2 | 1 |
| lineage4.8.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.3.1.1 | 1 |
| La1.7.X-unk4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 184 |
Geographic prevalence
Country level data for this variant is available for 56 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4797616 | Sensitive | lineage3 | in | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR5908124 | Other | lineage4.8 | None | ERR9117823 | Other | lineage1.1.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR9117792 | Other | lineage1.1.2 | None | ERR9119120 | Other | lineage4.8 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR10315705 | MDR-TB | lineage4.4.1.1.1 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | SRR11349194 | MDR-TB | lineage4.3.3 | None | SRR11342657 | HR-TB | lineage3 | None | SRR18002896 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370233 | Other | lineage1.2.1.2 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002932 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815684 | Other | lineage5.1.4 | gb | SRR19224247 | Other | lineage1.2.1.2 | None | SRR21686114 | Other | lineage3.1.3 | None | ERR4815178 | Other | lineage4.8 | gb | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815255 | Other | lineage4.4.2 | None | SRR19304114 | Other | lineage1.2.1.2.1 | None | ERR4815172 | Other | lineage1.2.2.2 | None | ERR4815298 | Other | lineage4.3.4.2.1 | None | ERR4815306 | Other | lineage1.2.1.2.1 | gb | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4815777 | Other | lineage4.9 | None | ERR4814362 | Other | lineage4.8 | None | ERR4815413 | Other | lineage4.3.4.2.1 | None | ERR4814748 | Other | lineage4.8 | None | ERR4815425 | Other | lineage4.5 | gb | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4815467 | Other | lineage3 | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4815476 | HR-TB | lineage2.2.1 | gb | ERR4814763 | Other | lineage2.2.1 | None | ERR4814783 | Other | lineage4.7 | None | ERR4814761 | Other | lineage4.8 | gb | ERR4814790 | Other | lineage4.2.1 | None | ERR4815039 | Other | lineage4.1.1.3.1 | gb | ERR4815502 | Other | lineage4.1 | None | ERR3276005 | Other | lineage4.1.2.1 | nl | SRR3675361 | Other | lineage1.1.2 | gb | ERR4817508 | Other | lineage4.1.2.1 | gb | ERR4816944 | RR-TB | lineage2.2 | None | ERR4816969 | Other | lineage4.8 | None | ERR4816968 | Other | lineage4.2.1 | gb | ERR2027248 | Other | lineage2.2.1 | None | ERR4816993 | Other | lineage4.3.4.2.1 | None | ERR4816562 | Other | lineage4 | None | ERR4816182 | Other | lineage3.1.2.1 | gb | ERR4816464 | Other | lineage3 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR2027292 | HR-TB | lineage3 | None | ERR4816191 | Other | lineage3.1.2 | gb | SRR3675556 | Other | lineage3 | None | ERR4816283 | Other | lineage4.1.2.1 | None | ERR4816314 | Other | lineage1.2.1.2.1 | gb | ERR4817368 | Other | lineage4.6.3 | None | ERR4817475 | Other | lineage4.1.1.3 | gb | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816690 | Other | None | ERR4816713 | Other | lineage1.1.2 | gb | ERR4816757 | Other | lineage2.2.1 | gb | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4817795 | Other | lineage4.7 | gb | ERR4817799 | Other | lineage3 | None | ERR4817822 | Other | lineage4.6 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR2513378 | Other | lineage3 | None | ERR4818724 | Other | lineage4.1.2.1 | gb | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4817987 | Other | lineage4.7 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818351 | Other | lineage1.1.3 | None | ERR4818810 | Other | lineage2.2.1 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4818274 | Other | lineage4 | None | ERR2512599 | Other | lineage3 | gb | ERR2512471 | Sensitive | lineage4.1.1 | gb | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4818249 | Other | lineage4.1.2.1 | gb | ERR2512716 | HR-TB | lineage4.6.2.2 | gb | ERR2513467 | Other | lineage1.1.2 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818580 | Other | lineage4.7 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007171 | Other | lineage2.2.1 | None | ERR2513296 | Other | lineage4.1.2.1 | gb | ERR2512849 | RR-TB | lineage1.1.3.1 | None | ERR4817602 | Sensitive | lineage4.1.2.1 | None | ERR4817547 | Other | lineage4.2.2.1 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4817645 | Other | lineage4.8 | None | ERR4819181 | Other | lineage3 | gb | ERR4819198 | Other | lineage2.2.1 | None | ERR4820714 | Other | lineage3 | gb | ERR4819228 | Sensitive | lineage4.1.1.2 | None | ERR2513808 | Other | lineage4.1.2.1 | gb | ERR4820270 | MDR-TB | lineage4.8 | gb | ERR2513841 | Sensitive | lineage4.1.1.3.1 | gb | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR2513912 | Other | lineage4.5 | gb | ERR4820297 | Other | lineage4.2.1 | None | ERR4819332 | Other | lineage3 | gb | ERR4819377 | Other | lineage4;lineage3.1.2.1 | None | ERR4820364 | HR-TB | lineage4.2.1.1 | gb | ERR4820404 | Other | lineage4.3.2 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4820408 | Other | lineage4.1.2.1 | None | ERR4819583 | Other | lineage1.1.2 | gb | ERR4819734 | RR-TB | lineage3 | gb | ERR4819730 | Other | lineage4.8 | None | ERR4820424 | Other | La1.8.1 | gb | ERR2514457 | Other | lineage4.1.1 | gb | ERR4819830 | Other | lineage2.2.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4820060 | Other | lineage4.3.3 | None | ERR4820543 | Other | La3 | None | ERR4820558 | Other | lineage4.8 | gb | ERR1023509 | Other | None | ERR2514896 | Other | lineage3 | gb | ERR2514968 | Other | lineage4.3.3 | None | ERR2514962 | Other | lineage4.4 | None | ERR4820049 | Other | lineage4.8 | gb | ERR4820059 | Other | lineage3 | None | ERR4821853 | Other | lineage4.3.3 | None | ERR4820679 | Other | lineage4.8 | None | ERR4820187 | Other | lineage4.3.3 | None | ERR4821011 | Other | lineage6 | None | ERR4821791 | HR-TB | lineage4.1.2.1 | None | ERR4821020 | Other | lineage4.1.1.3.1 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821932 | Other | lineage2.2.1 | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821953 | Other | lineage4.7 | gb | ERR4821449 | Other | lineage1.2.2.1 | gb | ERR4821325 | Other | lineage3 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4822085 | Other | lineage4.8 | gb | ERR4822105 | Other | lineage4.1 | None | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4822035 | Other | lineage4.8 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | ERR4821477 | Other | lineage4.8 | None | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4822154 | Other | lineage4.1.2.1 | None | SRR5818622 | Sensitive | lineage4.2.2.2 | None | SRR6045847 | Other | lineage4.3.3 | gb | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6045910 | Other | lineage3.1 | None | SRR6045925 | Other | lineage4.2 | None | SRR6044957 | Other | lineage4.8.2 | None | SRR6045920 | Other | lineage4.1.1 | gb | SRR6046223 | Sensitive | lineage3 | gb | SRR6045232 | Other | lineage4.1.1.3 | gb | SRR6045308 | Other | lineage3.1.2.2 | None | ERR4828450 | Sensitive | lineage1.1.1.1 | vn | SRR6046376 | Other | lineage3 | None | SRR6046636 | Other | lineage4.3.1.1 | gb | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046460 | HR-TB | None | SRR6046528 | Other | lineage3.1.2.1 | None | SRR6046839 | Other | lineage4.9 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR6153166 | Other | lineage1.2.1.2.1 | ca | ERR3148546 | Other | lineage4.3.2 | None | SRR6896190 | Other | lineage4.4.1.1.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR10796594 | Other | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None |
|---|
