EBG00000313339 - n.2473G>A
Drug resistance types
11 Sensitive
74 RR-TB
22 HR-TB
51 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
184 Other
lineage Counts
| lineage | Count |
|---|---|
| 13 | |
| lineage4 | 18 |
| lineage4.8 | 39 |
| lineage4.1.2 | 7 |
| lineage4.1.1.3.1 | 3 |
| lineage4.1.2.1 | 22 |
| lineage4.3.4.1 | 5 |
| lineage4.3 | 1 |
| lineage1 | 2 |
| lineage4.3.4.2 | 6 |
| lineage4.8.1 | 2 |
| lineage4.5 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.3.3 | 9 |
| lineage3 | 24 |
| lineage4.8.2 | 2 |
| lineage4.9 | 51 |
| lineage2.2.1 | 50 |
| lineage1.1.2 | 6 |
| lineage3.1.1 | 2 |
| lineage6.1.3 | 1 |
| lineage4.1.1.3 | 5 |
| lineage3.1.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.2.2.2 | 3 |
| lineage3.1 | 2 |
| lineage4.3.4.2.1 | 6 |
| lineage4.4 | 2 |
| lineage4.4.1.1 | 8 |
| lineage4.1.1 | 2 |
| lineage4.7 | 4 |
| lineage3.1.2.2 | 2 |
| lineage1.2.2.2 | 3 |
| lineage4.6.5 | 3 |
| lineage4.4.1.2 | 2 |
| lineage4.3.2 | 2 |
| La1.8.1 | 4 |
| lineage4.2.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage6.3.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.2.1 | 6 |
| lineage4.3.2.1 | 2 |
| lineage2.2.2 | 5 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.3.4 | 2 |
| lineage1.1.1.1 | 1 |
| lineage1.1.3.2 | 2 |
| lineage4.9.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| La2 | 1 |
| lineage2 | 1 |
| lineage4.4.2 | 3 |
| lineage4.2.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage2.2 | 1 |
| lineage5 | 1 |
| lineage4.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.6.1.2 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 359 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5818386 | Other | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228813 | Other | lineage4.8 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR4817294 | Other | lineage4.1.2 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SAMEA3450033 | Other | lineage4.8 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR4818988 | Other | lineage1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817853 | Other | lineage4.8.1 | None | ERR4818797 | Other | lineage4.5 | None | ERR4818126 | RR-TB | lineage1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4817645 | Other | lineage4.8 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819093 | Other | lineage4.3.3 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820484 | Other | lineage4.8 | None | ERR4820503 | Other | lineage2.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820827 | Other | lineage4.1.2 | None | ERR4820833 | HR-TB | None | ERR4821791 | HR-TB | lineage4.1.2.1 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | SRR6046087 | Other | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR5818445 | Other | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821373 | HR-TB | lineage4.1.2.1 | None | SRR6045618 | Other | lineage3.1.2 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045614 | Other | lineage4.8 | None | SRR5818414 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045726 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6044838 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045778 | Other | lineage3.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044774 | Other | lineage3 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044916 | Other | lineage4.1.1 | None | SRR6044952 | RR-TB | lineage4.9 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6046246 | Other | lineage3 | None | SRR6046359 | Other | lineage4.7 | None | SRR6044993 | Other | lineage3 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045124 | Other | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR6046482 | HR-TB | None | ERR4828972 | MDR-TB | lineage2.2.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046442 | Other | lineage3 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046517 | Other | lineage4.8 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046729 | Other | None | SRR6046743 | Other | lineage3 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046802 | Other | lineage4 | None | SRR6511600 | MDR-TB | lineage4.3.4.2 | None | SRR6046815 | Other | lineage3 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR3148546 | Other | lineage4.3.2 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982044 | Sensitive | lineage4.1.1.3 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR5087596 | Other | La1.8.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131020 | Sensitive | lineage4.8 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131257 | Other | lineage6.3.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9217359 | MDR-TB | lineage1.1.2 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR017781 | Other | lineage3 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR11465301 | Other | lineage4.3.4.2.1 | None | ERR019855 | Other | lineage3 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR11465488 | Sensitive | lineage4.1.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796627 | Other | lineage4 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR10796629 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR10796630 | HR-TB | None | ERR10796634 | Other | lineage4 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR3261389 | Other | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR10796635 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR5908124 | Other | lineage4.8 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197025 | Other | lineage4.7 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9117728 | Other | lineage3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7821182 | Other | lineage1.1.3.2 | None | ERR037504 | Other | lineage4.9.1 | None | ERR9117695 | Other | lineage4.1.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117759 | Other | lineage3 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | ERR9119120 | Other | lineage4.8 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315486 | MDR-TB | lineage2.2.1 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR10851730 | Other | lineage4.3.3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140736 | RR-TB | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1184379 | Other | lineage4 | None | SRR1173740 | Other | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR11972323 | RR-TB | lineage1.1.3.2 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR12199485 | Other | lineage2 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR16370216 | Sensitive | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19224237 | Sensitive | lineage4.8 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303815 | Other | lineage4.8 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SRR19304104 | Other | lineage4.8 | None | SRR19303907 | Other | lineage4.8 | None | SRR21728726 | HR-TB | lineage1.2.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR22424835 | HR-TB | lineage1.1.2 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR3675491 | Other | lineage4.7 | None | ERR4814329 | Other | lineage4.1.2.1 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | ERR1665403 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR4814790 | Other | lineage4.2.1 | None | ERR4814821 | Other | lineage2.2.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675452 | Other | lineage3 | None | ERR4815901 | Other | lineage2.2 | None | ERR2228965 | Other | lineage4.8 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4816928 | HR-TB | lineage1.2.2.2 | None | SRR3675510 | Other | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None | SRR3675533 | Sensitive | lineage3 | None | ERR4817060 | RR-TB | None | ERR4816043 | Other | lineage4.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027256 | Other | lineage4.1.2 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | SRR3675565 | Other | lineage3 | None | SRR3675590 | Sensitive | lineage4.8.1 | None | ERR2229147 | Other | lineage4.8 | None | ERR2229366 | Other | lineage4.8 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None |
|---|
