Rv0667 - c.2487T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
85 Sensitive
5 RR-TB
42 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9 | 4 |
| lineage4.9 | 102 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage3 | 2 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage1.2.1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| La1.3 | 1 |
| lineage2.2.1 | 10 |
| lineage4.1.1.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.8 | 2 |
| La1;lineage4.9 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4 | 1 |
| La1.8.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.3.4 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 1 | |
| La2;lineage2.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage6 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 175 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR6046376 | Other | lineage3 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR11465580 | Sensitive | lineage4.3.4.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR3797073 | Other | La1.8.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR1173213 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1173281 | Other | lineage3 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9787030 | Sensitive | lineage6 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None |
|---|
