EBG00000313339 - n.691C>T
Drug resistance types
51 Sensitive
55 RR-TB
18 HR-TB
57 MDR-TB
29 Pre-XDR-TB
0 XDR-TB
129 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 4 |
| lineage4.4.1.1 | 1 |
| lineage4.9 | 91 |
| lineage2.2.1 | 74 |
| lineage4.3.4.2.1 | 7 |
| lineage3;lineage4 | 2 |
| lineage2;lineage4 | 1 |
| lineage4.2.1 | 7 |
| lineage4.8 | 34 |
| lineage3 | 9 |
| lineage2.2.2 | 5 |
| La1.3 | 5 |
| lineage4.1.2.1 | 10 |
| lineage3.1.1 | 2 |
| lineage4.1.1.3 | 4 |
| lineage4.1.3 | 2 |
| lineage4.3.4.2 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.4.2 | 5 |
| lineage1.2.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage6.1.3 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.4.1 | 5 |
| lineage4.2.2.2 | 2 |
| lineage4.3.3 | 7 |
| La1.7.1 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.3;lineage4.8 | 3 |
| La1.8.1 | 4 |
| lineage4.4.1.2 | 1 |
| lineage4.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.1 | 5 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.6.1.2 | 5 |
| lineage2.2.1.1 | 1 |
| lineage4.7 | 3 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.8.1 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage4.4 | 1 |
| La2 | 1 |
| lineage3.1.3 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 339 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1181349 | Sensitive | lineage4 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR10796598 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR4820586 | Other | lineage3 | gb | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR4769555 | Sensitive | La1.3 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7070144 | Other | lineage4.8 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR1173281 | Other | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR6866241 | Other | lineage4.3.2 | None | SRR7131123 | Other | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR3675389 | Other | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR21469201 | Other | La1.7.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR3468488 | Other | La1.8.1 | None | ERR2228900 | Other | lineage4.8 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173770 | Other | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR7131061 | Other | lineage2.2.1 | None | ERR978727 | Other | lineage4.8 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR10796591 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18912069 | Other | lineage4.1.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046839 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR3675565 | Other | lineage4 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR867575 | Other | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | ERR1063855 | Other | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR9117788 | Other | lineage3 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR4769552 | Sensitive | La1.3 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR5311077 | Other | La1.8.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR037504 | Other | lineage4.9.1 | None | SRR1792022 | Other | La1.8.1 | None | ERR867571 | Other | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | SRR1062918 | Other | lineage3 | None | ERR4769514 | Other | La1.3 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR867544 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1180345 | Other | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR6045957 | Other | lineage4.9 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR7070320 | Other | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | DRR184982 | Other | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR176741 | Other | lineage4.9 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR18002976 | Other | lineage2.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2027220 | Sensitive | lineage3.1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR867572 | Other | lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR7070329 | Other | lineage3 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769436 | Other | La1.3 | None | SRR6046376 | Other | lineage3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR7131145 | Other | lineage4.1.2.1 | None |
|---|
