SRR3675477
|
Sensitive
|
lineage4.9
|
None
|
SRR6046385
|
Sensitive
|
lineage4.9
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR2512770
|
Sensitive
|
lineage4.2.1
|
None
|
SRR23961558
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29096410
|
Other
|
lineage4.9
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
ERR4819241
|
Other
|
lineage4.9
|
None
|
ERR4818929
|
HR-TB
|
lineage4.9
|
None
|
SRR1049675
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
ERR9787014
|
Other
|
lineage6.1.1
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4769417
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4815079
|
RR-TB
|
lineage3
|
None
|
ERR3275450
|
Other
|
lineage4
|
None
|
ERR9787336
|
RR-TB
|
lineage6.1.3
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
ERR4816476
|
Other
|
lineage3.1.2.1
|
None
|
SRR3675522
|
Other
|
lineage4.9
|
None
|
SRR1062919
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4820773
|
HR-TB
|
lineage4.9
|
None
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
ERR4821172
|
RR-TB
|
lineage4.9
|
None
|
ERR4821686
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
ERR5908124
|
Other
|
lineage4.8
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR3675473
|
Sensitive
|
lineage4.9
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
ERR4769508
|
RR-TB
|
lineage4.9
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502479
|
RR-TB
|
lineage4.9
|
None
|
ERR2512606
|
HR-TB
|
lineage3
|
None
|
ERR4796472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
ERR502478
|
RR-TB
|
lineage4.9
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
ERR2446382
|
Other
|
lineage4
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
SRR5341267
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4821272
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR4816478
|
HR-TB
|
lineage4
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR3675229
|
Sensitive
|
lineage4.9
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR4816656
|
Other
|
lineage4.9
|
None
|
ERR3797065
|
RR-TB
|
lineage4.9
|
None
|
ERR3799304
|
Other
|
lineage6.1.1
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
ERR2517475
|
Other
|
lineage4
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR1175507
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR4769530
|
RR-TB
|
lineage4.9
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
SRR1049673
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR502481
|
RR-TB
|
lineage4.9
|
None
|
ERR502474
|
RR-TB
|
lineage4.9
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR4829816
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR1915479
|
Other
|
La1.2.BCG
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR1140753
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
ERR4820266
|
Sensitive
|
lineage3
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1049672
|
Other
|
lineage3
|
None
|
SRR3675279
|
Sensitive
|
lineage4.9
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR3675514
|
Sensitive
|
lineage4.9
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
SRR12708374
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
ERR4819706
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
SRR1175508
|
Sensitive
|
lineage4.9
|
None
|
ERR4798504
|
RR-TB
|
lineage3
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
ERR4811035
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
ERR4815441
|
HR-TB
|
lineage4.9
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
SRR6046564
|
Sensitive
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
ERR4829039
|
RR-TB
|
lineage4.3.1
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
SRR5341437
|
Sensitive
|
lineage4.9
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
SRR9971113
|
Other
|
lineage2.2.1
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
SRR1915485
|
Other
|
La1.2.BCG
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR5341396
|
Other
|
lineage3;lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
ERR4819863
|
RR-TB
|
lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
ERR736835
|
HR-TB
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
SRR1049674
|
HR-TB
|
lineage2.2.1
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1175496
|
Sensitive
|
lineage4.9
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR7821126
|
Sensitive
|
lineage1.1.3.2
|
None
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR751345
|
Other
|
lineage5.1.1
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708384
|
Sensitive
|
lineage4.9
|
None
|
SRR5341296
|
Sensitive
|
lineage4.9
|
None
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR11342682
|
Other
|
lineage4.1.2
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR3675577
|
Sensitive
|
lineage4.9
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR502473
|
RR-TB
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
SRR1049581
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
SRR1915481
|
Other
|
La1.2.BCG;lineage4.9
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4819877
|
HR-TB
|
lineage4.9
|
None
|
ERR4817731
|
HR-TB
|
lineage4.9
|
None
|
SRR3675387
|
Other
|
lineage4.9
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR9119120
|
Other
|
lineage4.8
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR3675247
|
Other
|
lineage4.9
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
SRR29096150
|
Other
|
lineage4.9
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
SRR29097026
|
Other
|
lineage4.9
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR4800102
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR3675472
|
Sensitive
|
lineage4.9
|
None
|
SRR6982246
|
Sensitive
|
lineage4.1.2;lineage4.9
|
None
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
ERR2513283
|
Sensitive
|
lineage5.1.4
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
ERR4819422
|
HR-TB
|
lineage4.9
|
None
|
SRR1140724
|
Other
|
lineage2.2.1
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|