Rv1630 - c.816T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
78 Sensitive
42 RR-TB
38 HR-TB
29 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 109 |
| lineage4.1.2.1 | 5 |
| lineage4.5 | 1 |
| lineage3 | 14 |
| lineage4.3.3 | 5 |
| lineage4.8 | 20 |
| lineage2.2;lineage4.9 | 1 |
| lineage3.1.2.1 | 3 |
| lineage3.1.2.2 | 1 |
| lineage5.1.1 | 1 |
| lineage2.2.1 | 26 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.6.1.2 | 3 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4 | 5 |
| lineage4.3 | 1 |
| lineage4.2.1 | 4 |
| lineage6 | 1 |
| lineage4.1.1.3 | 3 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.3.2.1 | 2 |
| lineage3;lineage4 | 2 |
| lineage2;lineage4 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 5 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.2 | 3 |
| lineage2.2;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.9;lineage9 | 1 |
| lineage1.1.3.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.4.1.1.1 | 1 |
| La1.8.1 | 2 |
| lineage4.8.1 | 1 |
| La1.6 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.4.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| 2 | |
| lineage3;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La1.2.BCG | 3 |
| La1.3 | 1 |
| lineage6.1.1 | 2 |
| lineage4.3.1 | 1 |
| La2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 269 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046385 | Sensitive | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4815079 | RR-TB | lineage3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR5908124 | Other | lineage4.8 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR2446382 | Other | lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4816476 | Other | lineage3.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1023509 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR867573 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819241 | Other | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR3797029 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR3275450 | Other | lineage4 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4820266 | Sensitive | lineage3 | None | ERR978752 | Other | lineage4.8 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR9119120 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR2512606 | HR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR926163 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR978735 | Other | lineage4.8 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708416 | Sensitive | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7070223 | HR-TB | lineage3 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4798823 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | SRR1915479 | Other | La1.2.BCG | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1915485 | Other | La1.2.BCG | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR736831 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None |
|---|
