lineage | Count |
---|---|
lineage4.3.3 | 2 |
lineage1.1.1 | 1 |
lineage4.9 | 92 |
lineage3 | 16 |
lineage4 | 16 |
lineage4.1.2.1 | 7 |
10 | |
lineage4.2.1 | 2 |
lineage2.2.1 | 15 |
lineage4.7 | 2 |
lineage4.6.1.1 | 1 |
lineage4.8.1 | 1 |
lineage4.3.2.1 | 1 |
La1.7.X-unk4 | 1 |
La1.3 | 6 |
lineage4.9;La1.3 | 1 |
lineage4.5;lineage2.2.1 | 1 |
lineage2.2.2 | 1 |
lineage5.1.1 | 1 |
lineage4.6.5 | 2 |
lineage4.8 | 4 |
lineage4.3.4.2.1 | 4 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.4.1.1.1 | 2 |
lineage4.6.1.2 | 3 |
lineage4.9;lineage2.2 | 1 |
lineage2 | 1 |
lineage2.2 | 1 |
lineage4.4 | 1 |
lineage3.1.2.1 | 1 |
lineage4.3.4.2 | 1 |
lineage4;lineage2 | 1 |
lineage4;lineage3 | 1 |
lineage4.4.1.1 | 1 |
lineage4.1.1.3.1 | 2 |
lineage4.8.2 | 1 |
spoligotype | Count |
---|---|
None | 205 |
ID | Drug resistance | Lineage | Country iso2 | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR1023509 | Other | None | ERR4819933 | Other | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR7496471 | Sensitive | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3439265 | Other | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR9891966 | Sensitive | lineage4.1.2.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1140736 | RR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16157123 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR20632814 | Sensitive | lineage4 | None | ERR4814639 | HR-TB | lineage4 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR1750907 | RR-TB | None | ERR4815079 | RR-TB | lineage3 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4816470 | Other | lineage3 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR216965 | HR-TB | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815815 | Sensitive | lineage4 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4818039 | Sensitive | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None |
---|