EBG00000313339 - n.2438C>T
Drug resistance types
36 Sensitive
29 RR-TB
49 HR-TB
19 MDR-TB
10 Pre-XDR-TB
1 XDR-TB
75 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2 | 4 |
| lineage2.2.1 | 16 |
| La1.7.1 | 3 |
| lineage4.3.3 | 3 |
| lineage4.6.2.2 | 15 |
| lineage4.9 | 54 |
| lineage4 | 19 |
| lineage4;lineage2.2 | 1 |
| 38 | |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.8 | 9 |
| lineage4.1.2.1 | 3 |
| lineage3.1 | 1 |
| lineage4.1 | 1 |
| lineage4.5 | 2 |
| lineage1.1.2 | 2 |
| lineage4.2.1 | 1 |
| La1.8.1 | 9 |
| lineage3 | 3 |
| lineage4.3.2 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.3.4.2.1 | 2 |
| La2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2.2 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 2 |
| lineage3.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.8;lineage4.3.3 | 3 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage2 | 1 |
| lineage3.1.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 219 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR21469201 | Other | La1.7.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR21659832 | Sensitive | lineage4.6.2.2 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR11082155 | Sensitive | lineage4.6.2.2 | None | ERR8025753 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083106 | Other | lineage4.6.2.2 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692759 | Other | lineage4.9 | None | SRR8692783 | Other | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692810 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692858 | Sensitive | lineage4.9 | None | SRR8692854 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692771 | Other | lineage4.9 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692844 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692831 | Other | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR8692867 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675270 | HR-TB | None | ERR1750907 | RR-TB | None | ERR1750908 | Sensitive | lineage4 | None | ERR1750943 | Sensitive | lineage4 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR176740 | HR-TB | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675571 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | SRR3743401 | MDR-TB | lineage2.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR553093 | Sensitive | lineage4.6.2.2 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5341456 | Other | None | ERR4820030 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341470 | HR-TB | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR553092 | Sensitive | lineage4.6.2.2 | cg | SRR5431730 | Other | La1.8.1 | None | SRR6045466 | Sensitive | None | ERR2660539 | Other | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821937 | Sensitive | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6046299 | HR-TB | None | SRR6046397 | Other | None | SRR6046839 | Other | lineage4.9 | None | ERR2516448 | MDR-TB | lineage4.6.2.2 | nl | SRR6046492 | Other | None | SRR6046878 | HR-TB | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR4829733 | HR-TB | lineage4.6.2.2 | it | ERR502479 | RR-TB | lineage4.9 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982471 | Sensitive | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR294266 | HR-TB | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR11049373 | Sensitive | lineage4.6.2.2 | None | ERR502524 | HR-TB | La2 | None | ERR323039 | HR-TB | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323053 | HR-TB | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR3283014 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR11049409 | Sensitive | lineage4.6.2.2 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797046 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797068 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR405209 | Sensitive | lineage4 | None | ERR3806446 | Sensitive | lineage4.6.2.2 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR2513328 | Sensitive | lineage4.6.2.2 | gb | ERR4187670 | Other | La1.8.1 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769427 | Other | La1.2 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4798504 | Other | lineage3 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR5908124 | Other | lineage4.8 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4811493 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR736865 | HR-TB | None | ERR9119120 | Other | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786512 | Sensitive | lineage4.6.2.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR987722 | HR-TB | None | SRR1011502 | Sensitive | lineage4.6.2.2 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1019177 | Sensitive | lineage4.6.2.2 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140736 | RR-TB | None | SRR11444219 | Sensitive | lineage4.6.2.2 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1173770 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1175473 | Other | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12199485 | Other | lineage2 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1792011 | Other | La1.8.1 | None | SRR1792022 | Other | La1.8.1 | None |
|---|
