EBG00000313339 - n.2438C>T
Drug resistance types
33 Sensitive
20 RR-TB
22 HR-TB
14 MDR-TB
7 Pre-XDR-TB
1 XDR-TB
67 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.2 | 1 |
| lineage2.2.1 | 14 |
| lineage4.9 | 39 |
| lineage4.6.2.2 | 17 |
| lineage4.1.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage2;lineage4 | 1 |
| lineage2.2.1.1 | 4 |
| La1.7.1 | 2 |
| La1.8.1 | 3 |
| lineage4.8 | 18 |
| La1;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.4.1 | 5 |
| lineage2.2.1.2;lineage7 | 1 |
| La3;lineage4 | 1 |
| lineage4.2.1 | 2 |
| La3;lineage4.9 | 8 |
| La2;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage3 | 2 |
| lineage4.1.1.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage1.1.2 | 2 |
| 1 | |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 164 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | DRR185024 | Other | lineage2.2.2 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR11049373 | Sensitive | lineage4.6.2.2 | None | ERR4769452 | Other | lineage4.9 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR21469202 | Other | La1.7.1 | None | ERR867573 | Other | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR8692893 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR2513328 | Sensitive | lineage4.6.2.2 | gb | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR11082155 | Sensitive | lineage4.6.2.2 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR3743401 | MDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR5818414 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR1019177 | Sensitive | lineage4.6.2.2 | None | SRR7070451 | Sensitive | lineage4.6.2.2 | None | ERR978756 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR867575 | Other | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR9786512 | Sensitive | lineage4.6.2.2 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR6046593 | Other | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR3806446 | Other | lineage4.6.2.2 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | SRR6046253 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5341456 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4829733 | HR-TB | lineage4.6.2.2 | it | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR2516448 | MDR-TB | lineage4.6.2.2 | nl | ERR11465351 | Sensitive | lineage4.1.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR978752 | Other | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR867569 | Other | lineage4.9 | None | ERR553092 | Sensitive | lineage4.6.2.2 | cg | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR978762 | Other | lineage4.8 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR11444219 | Sensitive | lineage4.6.2.2 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | ERR11049409 | Sensitive | lineage4.6.2.2 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR11083106 | Other | lineage4.6.2.2 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR6046376 | Other | lineage3 | None | SRR21659832 | Other | lineage4.6.2.2 | None | ERR13273169 | Other | lineage4.6.2.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR1173185 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR1011502 | Sensitive | lineage4.6.2.2 | None | ERR987722 | MDR-TB | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR9786639 | Sensitive | lineage4.8 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR978751 | Other | lineage4.8 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR752229 | Other | lineage4.5 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046492 | Other | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR2446566 | Other | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR5341330 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR553093 | Sensitive | lineage4.6.2.2 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR978747 | Other | lineage4.8 | None | ERR4798139 | RR-TB | lineage1.1.2 | None |
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