lineage | Count |
---|---|
lineage4.3.3 | 3 |
lineage2.2.1 | 17 |
lineage4.9 | 45 |
lineage2.2.2 | 3 |
La1.4 | 1 |
lineage4.8 | 10 |
lineage3 | 19 |
lineage3.1.3 | 1 |
lineage4 | 19 |
lineage1.2.1.2 | 1 |
lineage4.4.2 | 1 |
17 | |
lineage4;lineage2.2 | 1 |
lineage3.1.1 | 2 |
lineage3.1 | 1 |
lineage1.1.3 | 1 |
lineage4.5 | 1 |
lineage4.1.2.1 | 3 |
lineage4;lineage2 | 1 |
lineage3.1.2.1 | 1 |
lineage1 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage1.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.3.4.2 | 1 |
lineage6 | 1 |
lineage4.2.2.2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.1 | 1 |
lineage4.7 | 1 |
lineage4.1 | 1 |
lineage4.3.2.1 | 1 |
La1.7.X-unk4 | 1 |
La1.3 | 4 |
La1.8.1 | 2 |
lineage4.9;La1.3 | 1 |
lineage4.6.5 | 2 |
lineage4.4.1.1.1 | 1 |
La1.6 | 1 |
La2 | 1 |
spoligotype | Count |
---|---|
None | 177 |
ID | Drug resistance | Lineage | Country iso2 | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR16962458 | Sensitive | lineage4.8 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692818 | Other | lineage4.9 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692887 | Other | None | ERR4814639 | HR-TB | lineage4 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4817464 | Other | lineage3.1.1 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4815994 | Other | lineage3 | gb | ERR4816093 | Other | lineage1.1.3 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2512986 | Other | lineage3 | None | ERR4819017 | RR-TB | lineage3 | None | ERR2515055 | Other | lineage3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4819051 | Other | lineage4 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818393 | RR-TB | lineage3 | None | ERR2509886 | RR-TB | lineage3 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR4818355 | Other | lineage3 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4820324 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2513348 | Other | lineage3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4819456 | Other | lineage4.8 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4820586 | Other | lineage3 | gb | ERR4820833 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | ERR4820107 | RR-TB | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR1023509 | Other | None | SRR6044780 | Other | lineage4.9 | None | ERR4821011 | Other | lineage6 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821761 | Other | lineage3 | gb | SRR6045957 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046376 | Other | lineage3 | None | SRR6046839 | Other | lineage4.9 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6982246 | Sensitive | lineage4 | None | ERR3283028 | Other | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283014 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR067712 | HR-TB | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR4769408 | Other | La1.3 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR4596902 | HR-TB | lineage3 | None | ERR3797048 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769517 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11462861 | Other | La1.8.1 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173740 | Other | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR13888750 | Other | La2 | None |
---|