EBG00000313339 - n.797G>A
Drug resistance types
50 Sensitive
66 RR-TB
23 HR-TB
50 MDR-TB
24 Pre-XDR-TB
1 XDR-TB
143 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 81 |
| 11 | |
| lineage4 | 21 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 3 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1 | 64 |
| lineage2 | 1 |
| lineage3.1.1 | 5 |
| lineage3 | 23 |
| lineage4.2.2.1 | 1 |
| lineage4.1.2.1 | 16 |
| La1.8.1 | 6 |
| La2 | 1 |
| lineage4.2.1 | 4 |
| lineage4.4 | 1 |
| lineage4.4.1.1 | 6 |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.2 | 5 |
| lineage4.2.2 | 1 |
| lineage4.8 | 28 |
| lineage6 | 2 |
| lineage4.4.2 | 1 |
| La1.7.1 | 2 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.3.3 | 5 |
| lineage1.2.1.1 | 2 |
| lineage5 | 1 |
| lineage3.1 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.6.2.2 | 4 |
| lineage3.1.2.1 | 1 |
| lineage4.3 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| lineage4.2.2.2 | 2 |
| lineage3.1.2.2 | 2 |
| lineage1.1.2 | 3 |
| lineage1.1.3.3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.1.1 | 2 |
| lineage1.1.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage5.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.7 | 3 |
| lineage4.8.1 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.4 | 1 |
| lineage4.4.1.2 | 1 |
| La1.3 | 7 |
| lineage4;La1.3 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage4.6.5 | 2 |
| lineage4.9.1 | 1 |
| lineage4.8;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 357 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173740 | Other | None | SRR1175473 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13180204 | Sensitive | lineage3 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR13888750 | Other | La2 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16156832 | RR-TB | None | SRR1792022 | Other | La1.8.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18912069 | Other | lineage4.1.2.1 | None | SRR19226954 | Sensitive | lineage4.1.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR19303808 | Sensitive | lineage4.1.2.1 | None | SRR19303985 | Other | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19304094 | Other | lineage6 | None | SRR20632814 | Sensitive | lineage4 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR21469201 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814714 | Other | lineage3 | None | SRR3675234 | Other | None | SRR3675230 | RR-TB | lineage3 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | ERR4816967 | RR-TB | lineage5 | None | ERR2229810 | Other | lineage4.8 | None | SRR3675509 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR3675565 | Other | lineage3 | None | ERR2229147 | Other | lineage4.8 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4817131 | Pre-XDR-TB | None | ERR2229801 | Other | lineage4 | None | ERR2228910 | Other | lineage4.8 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228838 | RR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR4817665 | Other | lineage4.8 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR2229391 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR4818904 | Other | lineage4.8 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR1023509 | Other | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR2515230 | Sensitive | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR2515022 | Sensitive | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821286 | Other | lineage4.8 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045709 | Other | lineage4.1.2.1;lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045743 | Other | lineage3 | None | SRR6044904 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044936 | Other | lineage4 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044993 | Other | lineage3 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6046020 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046291 | Other | lineage3 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4830856 | MDR-TB | lineage4.4.1.1 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046729 | Other | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046766 | Other | lineage3.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6397642 | RR-TB | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR4972588 | MDR-TB | lineage4.3.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131004 | Other | lineage4.6.2.2 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7496471 | Sensitive | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | DRR184932 | Other | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | DRR184629 | Other | lineage2.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR019855 | Other | lineage3 | None | ERR017781 | Other | lineage3 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796586 | Other | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796597 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796634 | Other | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR10796635 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3439265 | Other | lineage4.9 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797068 | Other | La1.8.1 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4769406 | Other | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769410 | Other | lineage4;La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769548 | Other | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800197 | HR-TB | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769555 | Other | La1.3 | None | ERR4800670 | RR-TB | lineage1.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR736837 | Other | lineage4.9 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR037504 | Other | lineage4.9.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117729 | Other | lineage3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR9787336 | Other | lineage6 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR1172717 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None |
|---|
