Rv1630 - c.411C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
26 Sensitive
17 RR-TB
18 HR-TB
20 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 33 |
| lineage2.2.1 | 10 |
| lineage4.8 | 10 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage2.2.2 | 1 |
| La1.8.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.8.1 | 2 |
| lineage4.1.1.1 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage3 | 4 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| 1 | |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.2.1 | 1 |
| lineage6 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.4.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.6.5 | 2 |
| lineage2.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 106 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR161037 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR4798823 | HR-TB | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787336 | RR-TB | lineage6 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR11465829 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
|---|
