EBG00000313325 - n.1028C>T
Drug resistance types
39 Sensitive
20 RR-TB
20 HR-TB
13 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 51 |
| lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.1 | 13 |
| La1.7.1 | 3 |
| lineage4.2.2.1 | 1 |
| lineage4.4.2 | 3 |
| lineage3 | 14 |
| lineage4.2.1 | 1 |
| La1.4 | 1 |
| lineage4 | 14 |
| lineage4.8 | 13 |
| lineage1.1.1 | 1 |
| lineage4.5 | 2 |
| 5 | |
| lineage4.1.2.1 | 5 |
| lineage3.1.3 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.8.1 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.3.3 | 2 |
| La1.2 | 1 |
| La1.8.1 | 1 |
| La1.3 | 7 |
| lineage4;La1.3 | 1 |
| lineage4.9;La1.3 | 2 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage6 | 1 |
| La1.6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 165 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR11972327 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR14001966 | Other | La1.7.1 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR13180204 | Sensitive | lineage3 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR1792073 | Other | La1.7.1 | None | ERR4815471 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR20632814 | Sensitive | lineage4 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21713567 | Sensitive | lineage4.5 | None | ERR1750943 | Sensitive | lineage4 | None | ERR1750908 | Sensitive | lineage4 | None | ERR1750907 | RR-TB | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR4816964 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2229104 | Sensitive | lineage4.8 | None | ERR4816470 | Other | lineage3 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817434 | Other | lineage3 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | ERR3275190 | Other | lineage3 | nl | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR2432997 | Other | lineage4.8 | None | ERR4818265 | Other | lineage4.1.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818952 | Other | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819462 | Other | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | ERR4820484 | Other | lineage4.8 | None | ERR1035138 | MDR-TB | None | ERR4820130 | Other | lineage3 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4819933 | Other | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR4820193 | Other | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR2660496 | Sensitive | lineage4.1.1.2 | None | SRR5818464 | Other | lineage4.9 | None | ERR4821492 | HR-TB | lineage3 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | ERR2851359 | Other | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046612 | Other | lineage1.1.1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR4832044 | MDR-TB | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982192 | Sensitive | lineage4.1.1.3 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4831863 | HR-TB | lineage2.2.1.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR11043155 | Other | La1.7.1 | None | ERR4769418 | Other | La1.2 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR3439441 | Other | La1.8.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769410 | Other | lineage4;La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769517 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4811101 | Other | lineage4.4.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR6197030 | Other | lineage4.9 | None | ERR6197028 | Other | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR736837 | Other | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR9787336 | Other | lineage6 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None |
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