EBG00000313339 - n.3009C>T
Drug resistance types
97 Sensitive
3 RR-TB
30 HR-TB
9 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 117 |
| lineage2.2.1 | 9 |
| lineage1.1.1 | 2 |
| La1.3 | 3 |
| lineage4.3.3 | 4 |
| lineage4.3.2.1 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.8.1 | 1 |
| lineage4.8 | 2 |
| lineage2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| 2 | |
| La1.2.BCG | 2 |
| lineage4.7 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage3 | 4 |
| La1.2;La1.8.1 | 1 |
| lineage4 | 3 |
| La1.7;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.6.1.1 | 2 |
| lineage4.5 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 184 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1172885 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR768010 | Sensitive | lineage1.1.1 | th | ERR4769555 | Sensitive | La1.3 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1181214 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR926163 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR1915487 | Other | La1.2.BCG | None | ERR473334 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR926169 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR2513259 | Other | lineage3 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4769408 | Other | La1.3 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR718318 | HR-TB | lineage1.1.1 | th | SRR6046259 | Sensitive | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180345 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR7911071 | Sensitive | lineage4.3.3 | za | SRR1180420 | Sensitive | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None |
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