Rv0668 - c.1494G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
17 RR-TB
22 HR-TB
7 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 11 |
| lineage4.9 | 58 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2.2.2 | 1 |
| lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage3 | 5 |
| lineage4.5 | 1 |
| lineage4.2.2.2 | 1 |
| La1.4 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.8 | 6 |
| lineage1.2.1.2 | 1 |
| lineage2.2.1.2 | 3 |
| La1.8.1 | 3 |
| lineage4.9;lineage7 | 1 |
| lineage2.2 | 1 |
| La1.3 | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| 1 | |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.3 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.3.4.1 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| La1.2 | 1 |
| lineage4.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 122 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR752229 | Other | lineage4.5 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR16278274 | Other | La1.4 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR7240033 | Other | La1.8.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4769514 | Other | La1.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR4798823 | HR-TB | None | SRR5535933 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR176741 | Other | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR4769457 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | SRR29096178 | Sensitive | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR7236330 | Other | La1.8.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR1034680 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.1 | co | ERR3283055 | HR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR1063855 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR5341330 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | SRR5431730 | Other | La1.8.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR4769493 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None |
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