lineage | Count |
---|---|
lineage2.2 | 7 |
lineage2.2.1 | 14 |
lineage4.9 | 57 |
lineage4.8 | 3 |
13 | |
lineage4.1.2 | 1 |
lineage4 | 12 |
lineage4.2.1 | 1 |
lineage4.4.1.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.3.2.1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.3 | 2 |
lineage1.1.1.1 | 1 |
lineage4.8.1 | 1 |
lineage4.4.2 | 2 |
La1.8.1 | 5 |
La1 | 1 |
La1.3 | 6 |
lineage4.5;lineage2.2.1 | 1 |
lineage4.9;La1.3 | 2 |
lineage4.1.2.1 | 2 |
lineage6 | 1 |
lineage3 | 2 |
lineage4.4.1.1.1 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage2 | 1 |
lineage4.2.2.1 | 1 |
La2 | 1 |
La1.7.1 | 2 |
spoligotype | Count |
---|---|
None | 147 |
ID | Drug resistance | Lineage | Country iso2 | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR2229655 | Other | lineage4.8 | None | SRR3675270 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | SRR4035832 | Other | lineage4.1.2 | None | ERR4819357 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5535933 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045217 | Other | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR9971112 | Other | lineage2.2.1 | None | SRR6046046 | Other | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6982090 | RR-TB | lineage4.4.1.1 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR484743 | Other | lineage4.6.1.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323108 | HR-TB | lineage4 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063855 | Other | lineage4 | None | ERR1034634 | HR-TB | None | ERR037234 | Sensitive | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3283010 | Other | La1 | None | ERR3283040 | HR-TB | None | ERR3439441 | Other | La1.8.1 | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR6358951 | HR-TB | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515304 | Pre-XDR-TB | lineage2.2.1 | za | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR5979789 | Other | lineage4.9 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4799025 | Pre-XDR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9787336 | Other | lineage6 | None | ERR9786076 | Sensitive | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR13180204 | Sensitive | lineage3 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR14782405 | HR-TB | None | SRR13888750 | Other | La2 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR1791725 | Other | La1.8.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR2101637 | RR-TB | lineage4.4.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR21469201 | Other | La1.7.1 | None |
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