EBG00000313339 - n.100T>G
Drug resistance types
58 Sensitive
12 RR-TB
29 HR-TB
10 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 7 |
| 3 | |
| lineage4.7 | 2 |
| lineage2.2.1 | 17 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1 | 4 |
| lineage4.1.2.1 | 3 |
| lineage4.8.1 | 1 |
| lineage4 | 18 |
| lineage4.9 | 72 |
| La1.8.1 | 2 |
| lineage3 | 9 |
| La1.3 | 8 |
| lineage4.9;La1.3 | 2 |
| lineage6 | 1 |
| La1.6 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.2.2.1 | 1 |
| La2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage4.3.3 | 1 |
| La3 | 1 |
| lineage4.1.1 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 169 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7645927 | Other | lineage4.8 | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR10796597 | Other | lineage4 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4769551 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR9786076 | Sensitive | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9787336 | Other | lineage6 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1140736 | RR-TB | None | SRR11462861 | Other | La1.8.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR13180206 | Sensitive | lineage4.8 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR4815815 | Sensitive | lineage4 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR228175 | Sensitive | lineage3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4819314 | Other | lineage1.1.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR2100532 | Sensitive | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819952 | Sensitive | La3 | None | ERR4819910 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045480 | Other | lineage4.1.1 | None | SRR6046385 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | SRR6046739 | Other | lineage1.1.2 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None |
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