Rv3246c - c.601C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
51 Sensitive
2 RR-TB
26 HR-TB
19 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| lineage4.1.2.1 | 19 |
| La3;lineage4 | 1 |
| lineage2.2.1 | 3 |
| La2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| La3;lineage4.9 | 8 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.2.1 | 1 |
| La1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.8 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1.3 | 1 |
| lineage4 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.6;lineage4 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 2 |
| lineage2.1;lineage4.9 | 1 |
| La1.8.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 123 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2693252 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR11043904 | MDR-TB | lineage4.1.2.1 | None | ERR13284251 | MDR-TB | lineage4.1.2.1 | None | ERR3283028 | Other | La3;lineage4 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4276879 | MDR-TB | lineage4.1.2.1 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR11044566 | MDR-TB | lineage4.1.2.1 | None | SRR29273920 | MDR-TB | lineage4.1.2.1 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | SRR29273746 | MDR-TB | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | ERR4276877 | MDR-TB | lineage4.1.2.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1166086 | MDR-TB | lineage4.1.2.1 | ro | ERR4769514 | Other | La1.3 | None | SRR1166316 | MDR-TB | lineage4.1.2.1 | ro | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR4831252 | MDR-TB | lineage4.1.2.1 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR11067753 | HR-TB | lineage4.1.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR7341664 | HR-TB | lineage4.1.2.1 | ro | ERR926165 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR6866807 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR24466746 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29274190 | MDR-TB | lineage4.1.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR11067508 | MDR-TB | lineage4.1.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR3276019 | HR-TB | lineage4.1.2.1 | nl | ERR323115 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR29273863 | MDR-TB | lineage4.1.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR21690774 | HR-TB | lineage4.1.2.1 | None | SRR28646064 | MDR-TB | lineage4.1.2.1 | None | SRR27449963 | Sensitive | lineage3 | None | SRR5341387 | Other | lineage4.9 | None |
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