EBG00000313339 - n.158T>C
Drug resistance types
48 Sensitive
10 RR-TB
18 HR-TB
26 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9 | 52 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.3.2 | 3 |
| lineage4.1.1 | 1 |
| lineage4.1.2.1 | 8 |
| lineage4.1.1.3 | 1 |
| lineage4.6.1.2 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.3.3 | 4 |
| lineage4.8.1 | 1 |
| lineage4.3.4.2 | 4 |
| lineage2.2.1;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 5 |
| lineage3;lineage4 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.8 | 3 |
| M.canetti;lineage4.9 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.3;lineage4.3.4.2 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| La1.3 | 4 |
| lineage4.3.4.1 | 4 |
| lineage4.4.1.1.1 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.1.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La1.2.BCG | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| lineage4 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 134 |
Geographic prevalence
Country level data for this variant is available for 28 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR2100532 | Sensitive | lineage3 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR1035316 | MDR-TB | lineage4.3.2 | br | ERR1035354 | MDR-TB | lineage4.1.1 | br | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR1213899 | Other | lineage4.1.1.3 | pe | ERR1035296 | HR-TB | lineage4.9 | br | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR1213889 | MDR-TB | lineage4.3.4.2.1 | rw | SRR6046141 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR228175 | Sensitive | lineage3 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR1213875 | Sensitive | lineage4.3.3 | de | SRR1181325 | Sensitive | lineage4.9 | None | ERR2124081 | MDR-TB | lineage4.6.1.2 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR1034911 | MDR-TB | lineage4.3.3;lineage4.3.4.2 | pt | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR9786711 | Other | lineage4.6.2.2 | None | ERR4769555 | Sensitive | La1.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR1035299 | MDR-TB | lineage4.1.2.1 | br | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR1035318 | Pre-XDR-TB | lineage4.3.4.1 | br | SRR6046385 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4769408 | Other | La1.3 | None | ERR1213911 | Sensitive | lineage4.3.4.2 | es | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR1034907 | Pre-XDR-TB | lineage4.3.4.1 | pt | ERR1035317 | RR-TB | lineage4.3.4.2 | br | SRR6045832 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | SRR1175487 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR1063855 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR1035293 | MDR-TB | lineage4.3.4.2 | br | ERR4816198 | Sensitive | lineage4.1.3 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR1213930 | Other | lineage4.3.2 | pe | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4769552 | Sensitive | La1.3 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR3801503 | Other | lineage4.6.2.2 | None | SRR1173281 | Other | lineage3 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769516 | Sensitive | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR1035315 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR3283018 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR1035300 | HR-TB | lineage4.1.2.1 | br | ERR2515230 | Sensitive | lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR1181368 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR1213874 | MDR-TB | lineage2.2.1 | kr | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR1035295 | MDR-TB | lineage4.1.2.1 | br | ERR176741 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR1213900 | RR-TB | lineage4.1.2.1 | pe | SRR1181349 | Sensitive | lineage4 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR1213884 | Other | lineage1.2.2.2 | np | SRR1180355 | Sensitive | lineage4.9 | None | ERR1213928 | MDR-TB | lineage4.3.3 | pe | SRR1180250 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR1035301 | MDR-TB | lineage4.3.2 | br | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR1035353 | MDR-TB | lineage4.4.1.2 | br | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675222 | Other | La1.7 | None | SRR3675389 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None |
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