Run ID: ERR5864323
Sample name:
Date: 01-04-2023 23:16:23
Number of reads: 2352158
Percentage reads mapped: 81.05
Strain: lineage4.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 766467 | p.Glu1033Ala | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472518 | n.673G>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473080 | n.1235C>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473099 | n.1254T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.21 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065832 | c.360C>T | synonymous_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038223 | p.Ala828Ser | missense_variant | 1.0 |
panD | 4044424 | c.-143A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249594 | c.3081G>A | synonymous_variant | 1.0 |
ethA | 4328376 | c.-903G>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407995 | p.Ser70Arg | missense_variant | 1.0 |