Run ID: DRR120409
Sample name:
Date: 31-03-2023 07:02:47
Number of reads: 1783202
Percentage reads mapped: 73.38
Strain: La2
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La2 | M.caprae | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2155168 | p.Ser315Asn | missense_variant | 0.94 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrB | 6917 | p.His560Tyr | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490811 | p.Ala10Val | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 761899 | p.Asp698Gly | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776839 | p.Asp548Asn | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 0.98 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472701 | n.856T>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475707 | n.2050T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475751 | n.2094C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475754 | n.2097G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475774 | n.2117C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475777 | n.2120A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.13 |
inhA | 1673766 | c.-436C>T | upstream_gene_variant | 1.0 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918524 | c.585T>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2154790 | p.Pro441Gln | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167680 | p.Ser978Leu | missense_variant | 0.98 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715035 | p.Met100Val | missense_variant | 1.0 |
Rv2752c | 3064803 | c.1389C>T | synonymous_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448330 | c.-174A>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4243190 | c.-43G>A | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embA | 4244270 | c.1038G>C | synonymous_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4268008 | p.Gly277Arg | missense_variant | 0.98 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |