EBG00000313339 - n.42A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
113 Sensitive
5 RR-TB
56 HR-TB
13 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 142 |
| lineage4.9;lineage7 | 2 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.1 | 16 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.1.2.1 | 3 |
| lineage1.1.1 | 1 |
| lineage4.7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| 2 | |
| lineage4.3.4.2.1 | 5 |
| La1.7;lineage4.9;lineage7 | 3 |
| La2;lineage2.2 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.1.1.3 | 3 |
| lineage2.1;lineage4.9 | 2 |
| lineage1.2.1.2.1 | 3 |
| lineage4.3.2.1 | 3 |
| La3;lineage4.9 | 6 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.4 | 1 |
| lineage2.2.2 | 1 |
| lineage1.1.2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.2.1 | 3 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.8.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.3 | 3 |
| La1.7;lineage4.9 | 4 |
| lineage4.4.1.1.1 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.8 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.1.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.2.1.1 | 1 |
| La1;lineage4.9 | 2 |
| lineage3 | 1 |
| lineage3;lineage4 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 243 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797079 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1181214 | Other | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR1063896 | Sensitive | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR16058013 | HR-TB | lineage1.2.1.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4820030 | Other | lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR9125730 | HR-TB | lineage1.2.1.2.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR5341467 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1181368 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR5709861 | Sensitive | lineage1.2.1.2.1 | th | SRR6046385 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None |
|---|
