EBG00000313339 - n.42A>G
Drug resistance types
112 Sensitive
13 RR-TB
76 HR-TB
26 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
77 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 90 |
| lineage2.2.1 | 19 |
| 48 | |
| La2 | 1 |
| lineage4.2.2.1 | 2 |
| lineage4.1.2.1 | 5 |
| lineage4.2.1 | 5 |
| La1.8.1 | 3 |
| lineage1.2.1.2.1 | 3 |
| lineage3.1.3 | 2 |
| lineage4 | 75 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage2.2 | 4 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 2 |
| lineage4.3.4.2.1 | 5 |
| lineage4.1.3 | 2 |
| lineage4.8 | 7 |
| lineage4.3.4.2 | 1 |
| lineage3 | 4 |
| lineage4;lineage2 | 1 |
| lineage1.1.2 | 4 |
| lineage4.1.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 4 |
| lineage4.9;La1.3 | 1 |
| lineage4.6.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 315 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR13888750 | Other | La2 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR16058013 | HR-TB | lineage1.2.1.2.1 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692832 | Other | lineage4.9 | None | SRR8692887 | Other | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR181744 | HR-TB | None | ERR4815489 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675246 | Sensitive | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815036 | Sensitive | lineage4.8 | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4816470 | Other | lineage3 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816762 | Other | lineage4;lineage2 | None | SRR3675555 | HR-TB | None | ERR212123 | Other | None | ERR212138 | HR-TB | lineage4 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818832 | Sensitive | lineage1.1.2 | gb | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4819051 | Other | lineage4 | None | ERR4818904 | Other | lineage4.8 | None | SRR5341387 | Other | lineage4 | None | SRR5341453 | Sensitive | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341396 | Other | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1035138 | MDR-TB | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341300 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821787 | Sensitive | lineage4.9 | None | SRR5341469 | Other | lineage4 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6046210 | Other | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | SRR5709861 | Sensitive | lineage1.2.1.2.1 | th | ERR4821263 | Other | lineage4.1.3 | gb | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | ERR323037 | HR-TB | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6511621 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR323107 | Other | lineage4 | None | SRR8217918 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR037235 | Sensitive | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR10796597 | Other | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283028 | Other | None | ERR3283025 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797068 | Other | La1.8.1 | None | ERR387051 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR473334 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4796577 | MDR-TB | None | ERR4769555 | Other | La1.3 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797264 | Sensitive | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798099 | Other | None | ERR6358951 | HR-TB | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359125 | MDR-TB | lineage4.6.1.2 | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR736848 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR9119669 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR751326 | Sensitive | lineage4 | None | ERR9125730 | HR-TB | lineage1.2.1.2.1 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10993951 | RR-TB | La1.6 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1173170 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None |
|---|
