EBG00000313339 - n.1842C>T
Drug resistance types
8 Sensitive
29 RR-TB
14 HR-TB
20 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
77 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.9 | 31 |
| lineage1.2.2.2 | 1 |
| lineage3 | 16 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.2.1 | 4 |
| lineage4.6.1.2 | 5 |
| lineage2.2.1 | 9 |
| lineage4.1.2.1 | 12 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4 | 7 |
| La1.6 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 7 |
| 5 | |
| La2 | 1 |
| lineage4.8 | 12 |
| lineage2.2.1.1 | 2 |
| lineage4.1.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.1 | 1 |
| lineage5 | 2 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.2 | 3 |
| lineage4.3.4.2 | 1 |
| lineage4.6.2.2 | 4 |
| lineage4.3.4.1 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1.1 | 4 |
| lineage1.1.3.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4.4 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.8;lineage3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 155 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9117760 | HR-TB | lineage4.3 | None | ERR3957933 | Sensitive | lineage4.1.1.3 | None | ERR473279 | Other | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117788 | Other | lineage3 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18665450 | Sensitive | lineage4.1.1 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR4815777 | Other | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4814709 | Other | lineage4.1.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4814745 | Other | lineage4.6.5 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815502 | Other | lineage4.1 | None | SRR3675265 | Other | lineage4 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816417 | Other | lineage4.9 | None | ERR3275298 | MDR-TB | lineage4.8 | nl | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816232 | Other | lineage4 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4816464 | Other | lineage3 | None | ERR4816511 | Other | lineage3 | gb | ERR4816531 | Other | lineage4.1.2 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818691 | Other | lineage4.8 | None | ERR4817874 | Other | lineage3 | None | SRR4035772 | Sensitive | lineage4.1.2 | None | ERR4817194 | Other | lineage4.1.2.1 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4818752 | Other | lineage3 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR2512491 | Sensitive | lineage3 | gb | ERR4818570 | Other | lineage4.3.3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818232 | Other | lineage4.1.2 | gb | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR4819191 | Other | lineage4.6.2.2 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4819324 | Other | lineage4.8 | gb | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4820484 | Other | lineage4.8 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4821791 | HR-TB | lineage4.1.2.1 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820188 | Other | lineage3 | gb | ERR4821028 | Sensitive | lineage3.1.1 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR6045485 | Other | lineage4.9 | None | SRR6045464 | Other | lineage4.1.1.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4822167 | Other | lineage4.6.2.2 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821310 | Other | lineage5 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6044817 | Other | lineage3 | None | ERR4821761 | Other | lineage3 | gb | SRR6045664 | Other | lineage4.2.1 | None | SRR6044787 | Other | lineage4.4 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046020 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6046250 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR4829337 | Other | lineage4.8 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046442 | Other | lineage3 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR017781 | Other | lineage3 | None | ERR019855 | Other | lineage3 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046852 | MDR-TB | lineage3 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR7131123 | Other | lineage4.8 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None |
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