EBG00000313339 - n.39T>C


Drug resistance types
60 Sensitive 5 RR-TB 84 HR-TB 12 MDR-TB 5 Pre-XDR-TB 0 XDR-TB 48 Other
lineage Counts
lineage Count
lineage4.9 137
lineage2.2.1 12
lineage2.2 1
lineage4.3.4 1
lineage4.4.1.1.1 2
lineage2.2.1.1 1
lineage4.3.4.2.1 3
La1.7;lineage4.9;lineage7 3
La1;lineage2;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
lineage2.2.2 1
lineage4.1.1.3 3
La1.7;lineage4.9 4
lineage4.9;lineage7 1
lineage1.1.2 3
lineage4.3.2.1 3
lineage3 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.4.1.2 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage2.2.1;lineage4.9 3
lineage4.3.3 3
lineage4.1.1.3;lineage4.9 2
lineage1.1.3.1 1
La1.7;lineage4.9;lineage6 1
La2;lineage2.2 1
La1.7.1 1
La3;M.canetti;lineage4.9 1
lineage4.8 1
lineage1.1.1 1
lineage2.2;lineage4.9 1
lineage2.2.1;lineage4 1
La1.7;lineage3.1;lineage4 1
lineage1.2.2.2 1
lineage2;lineage4.9 1
lineage4.1.2 1
La2;lineage4.9 1
lineage4 2
lineage1;lineage4.9 1
La1;lineage4.9 2
lineage4.4.1.1 1
La1.7.1;lineage4.9 1
lineage4.2.1 1
lineage4.1.2.1 1
La1;lineage4.1.2 1
1
spoligotype Counts
spoligotype Count
None 214
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1173568 Sensitive lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR176651 Other lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
ERR4810624 MDR-TB lineage2.2 None
ERR736817 HR-TB lineage4.3.4 None
SRR1180345 Other lineage4.9 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
SRR10808668 Other lineage2.2.1 None
ERR970441 RR-TB lineage2.2.1.1 None
SRR6045832 Other lineage4.9 None
SRR6046141 Other lineage4.9 None
SRR1173385 Sensitive lineage4.9 None
SRR7535082 Other lineage4.9 None
ERR176741 Other lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341300 HR-TB lineage4.9 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
ERR6359066 HR-TB lineage4.9 None
ERR176778 HR-TB lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
SRR1180996 Other lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
SRR1172807 Sensitive lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR1181214 Other lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR1180319 Sensitive lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
SRR1180250 Other lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR1172717 Sensitive lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR4819546 HR-TB lineage3 None
ERR4769444 HR-TB lineage4.9 None
ERR926164 Other lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR1180391 Sensitive lineage4.9 None
SRR5341455 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR5341467 Other lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
SRR11972367 Sensitive lineage2.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR1034634 HR-TB lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR970445 MDR-TB lineage2.2.1 None
ERR926161 Sensitive lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR137286 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR1049675 HR-TB lineage2.2.1 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR1181368 Other lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR6046385 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR21662810 Sensitive lineage4.9 None
SRR2024953 MDR-TB lineage2.2.1 cn
SRR1792478 HR-TB La1.7.1 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR4817667 HR-TB lineage4.8 None
SRR5341400 Sensitive lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR4819314 HR-TB lineage1.1.1 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
ERR4769521 RR-TB lineage4.9 None
SRR1181351 Sensitive lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR1183965 Sensitive lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR1180312 Sensitive lineage4.9 None
ERR323066 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR5341308 HR-TB lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR12708411 HR-TB lineage1.2.2.2 None
ERR323062 HR-TB lineage4.9 None
ERR926163 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR751326 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
SRR1180946 Sensitive lineage2;lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR736831 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
SRR5341293 Sensitive lineage4.9 None
ERR473332 Other lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR502510 HR-TB lineage4.9 None
SRR12708371 HR-TB lineage4.1.1.3 None
ERR736834 HR-TB lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR926155 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
ERR4815815 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR245675 Sensitive lineage1.1.2 None
SRR1180406 Sensitive lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR736872 HR-TB lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR5341298 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1159378 Other lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
ERR926165 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
ERR6866410 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5153091 HR-TB lineage4.3.3 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR1184021 Sensitive lineage4.9 None
ERR067712 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
ERR4816762 Sensitive lineage4.9 None
ERR4818536 Other lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR1063855 Other lineage4.9 None
ERR4798823 HR-TB lineage4 None
ERR4821655 HR-TB lineage4.9 None
SRR1181349 Sensitive lineage4 None
ERR124636 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR4814639 HR-TB lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR11342698 RR-TB lineage4.4.1.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1184308 RR-TB lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4818646 Sensitive lineage4.1.2.1 None
SRR12708409 HR-TB lineage4.3.3 None
ERR4819462 Sensitive lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR21677886 Sensitive lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
SRR1158918 Other lineage4.9 None
ERR970413 MDR-TB lineage2.2.1 None
ERR212125 HR-TB lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
ERR1063896 HR-TB None