EBG00000313339 - n.2872A>T
Drug resistance types
20 Sensitive
12 RR-TB
34 HR-TB
6 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 19 |
| 17 | |
| lineage4.2.1 | 1 |
| La1.8.1 | 3 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2 | 3 |
| lineage2.2.1 | 11 |
| lineage4 | 7 |
| lineage4.8 | 16 |
| lineage4.4.1.1 | 2 |
| lineage4.1.2.1 | 7 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage1.1.1 | 1 |
| lineage3 | 3 |
| lineage4.3.1.1 | 1 |
| lineage4.5 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.4.2 | 2 |
| lineage4.1.1 | 1 |
| lineage3.1.1 | 2 |
| La1.2 | 2 |
| La1.3 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.6.5 | 2 |
| lineage6 | 1 |
| lineage2.2.1.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 122 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16156188 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR18572455 | Sensitive | lineage4.9 | None | SRR1791725 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2 | None | SRR3743401 | MDR-TB | lineage2.2.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815257 | HR-TB | lineage4.4.1.1 | None | SRR3675270 | HR-TB | None | ERR4816969 | Other | lineage4.8 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4814697 | Sensitive | lineage4.4.1.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4817292 | Sensitive | lineage4.3.4.2.1 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2446566 | Other | lineage4.1 | None | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4817628 | Sensitive | lineage4.8 | gb | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5007178 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4819655 | Other | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820829 | Other | lineage4.8 | None | ERR4820026 | Other | lineage3 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR4820742 | Other | lineage4.3.4.2.1 | None | SRR5341456 | Other | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5431730 | Other | La1.8.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR4821849 | Other | lineage4.5 | gb | ERR4821054 | Other | lineage3 | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045053 | Other | None | ERR4822150 | Other | lineage4.8 | gb | SRR6044936 | Other | lineage4 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6046253 | HR-TB | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046492 | Other | None | SRR6046299 | HR-TB | None | ERR4830699 | Sensitive | lineage4.1.2 | dz | SRR6855939 | Sensitive | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | SRR6982246 | Sensitive | lineage4 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | DRR184903 | Sensitive | lineage2.2.2 | None | SRR7131004 | Other | lineage4.6.2.2 | None | DRR188519 | Other | lineage4.4.2 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796623 | Other | lineage4.1.1 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR3797046 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3439265 | Other | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4769427 | Other | La1.2 | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769517 | Other | La1.3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4811493 | HR-TB | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9787033 | Sensitive | lineage6 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None |
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