EBG00000313339 - n.1875A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
24 Sensitive
4 RR-TB
37 HR-TB
17 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.2 | 1 |
| lineage4.9 | 48 |
| lineage4.8 | 1 |
| lineage4.3.4.2 | 8 |
| lineage4.1.1.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| lineage2.1;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| La1.7;lineage4.9 | 3 |
| M.canetti;lineage1 | 1 |
| lineage6 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2.1 | 3 |
| lineage4.9;lineage7 | 3 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.8.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage1.1.2 | 1 |
| 1 | |
| lineage4.3.4.2.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 121 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969542 | Other | lineage4.4.2 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR4820484 | Sensitive | lineage4.8 | None | ERR4811777 | MDR-TB | lineage4.3.4.2 | pe | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4812875 | MDR-TB | lineage4.3.4.2 | None | ERR4818536 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9787030 | Sensitive | lineage6 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR176751 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR4813156 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR181824 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR28393785 | MDR-TB | lineage4.3.4.2 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR6824354 | MDR-TB | lineage4.5 | cn | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4821811 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | ERR13261948 | MDR-TB | lineage4.3.4.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR28393790 | MDR-TB | lineage4.3.4.2 | None | ERR3283042 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR12117986 | MDR-TB | lineage4.3.4.2 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
|---|
